RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PRMT8Q9NR22 394 aaPredicted RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 ST7Q9NRC1 585 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 ECHDC1Q9NTX5 307 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 GEMIN8Q9NWZ8 242 aaKnown RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 TMEM260Q9NX78 707 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.66□□□□□ -1.66
LIG3-211ENST00000588713 TPCN1Q9ULQ1 816 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 HDAC5Q9UQL6 1122 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 RBM8AQ9Y5S9 174 aaKnown RBP4.66□□□□□ -1.66
LIG3-211ENST00000588713 HCFC2Q9Y5Z7 792 aa4.66□□□□□ -1.66
LIG3-211ENST00000588713 A0A1W2PQ27 194 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 A0A1W2PQ64 194 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 A0A1W2PQD8 194 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 CCDC151A5D8V7 595 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 SHISA7A6NL88 538 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 MYO1CO00159 1063 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 IKBKBO14920 756 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 FSCN2O14926 492 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 SLC27A2O14975 620 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 TREHO43280 583 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 ZSCAN12O43309 604 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 HOXA2O43364 376 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 EIF3JO75822 258 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 DGKIO75912 1065 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 FGF18O76093 207 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 SMC2O95347 1197 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 CPP00450 1065 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 CAPNS1P04632 268 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 ZNF806P0C7X5 589 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 USP5P45974 858 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 GATMP50440 423 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 NRLP54845 237 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 STARD6P59095 220 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 TUBB4BP68371 445 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 SKOR1P84550 965 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 UBE3AQ05086 875 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 MTAPQ13126 283 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 TOB2Q14106 344 aaPredicted RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 BRD3Q15059 726 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 ZSCAN26Q16670 478 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 ERCC6LQ2NKX8 1250 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 DAB2IPQ5VWQ8 1189 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 CC2D1AQ6P1N0 951 aaPredicted RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 CWC27Q6UX04 472 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 SYT10Q6XYQ8 523 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 KRBA2Q6ZNG9 492 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 CMTR2Q8IYT2 770 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 CLASRPQ8N2M8 674 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 SLC44A3Q8N4M1 653 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 AOPEPQ8N6M6 819 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 KRI1Q8N9T8 703 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 CHST13Q8NET6 341 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 NEK11Q8NG66 645 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 SMARCC2Q8TAQ2 1214 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 PIP4K2CQ8TBX8 421 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 RASGRP4Q8TDF6 673 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 MRPS27Q92552 414 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 RABGGTAQ92696 567 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 APBB2Q92870 758 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 BRF1Q92994 677 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 IL1RAPL2Q9NP60 686 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 A1CFQ9NQ94 594 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 JADE2Q9NQC1 790 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 LRP2BPQ9P2M1 347 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 FBXO40Q9UH90 709 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 RRP15Q9Y3B9 282 aaKnown RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 PCDHB12Q9Y5F1 795 aa4.65□□□□□ -1.67
LIG3-211ENST00000588713 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.65□□□□□ -1.67
LIG3-211ENST00000588713 KALRNO60229 2985 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 SPAARA0A1B0GVQ0 90 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 A6NJR5 290 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 CHURC1-FNTBB4DL54 471 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 H3BQV1 296 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 EYA2O00167 538 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 SRGAP3O43295 1099 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 SLC28A2O43868 658 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ZBED4O75132 1171 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 SURF6O75683 361 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 ZMYND10O75800 440 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 YEATS4O95619 227 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TUBBP07437 444 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 CEACAM1P13688 526 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 CPA1P15085 419 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 JUNDP17535 347 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ACTN2P35609 894 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 NOP2P46087 812 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 FNTBP49356 437 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 EVCP57679 992 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 DYNLL1P63167 89 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 GUCA2AQ02747 115 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 PTH1RQ03431 593 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 TUBB2AQ13885 445 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 SMC1AQ14683 1233 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 ARID5BQ14865 1188 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ZRSR1Q15695 479 aaKnown RBP4.64□□□□□ -1.67
LIG3-211ENST00000588713 C4orf17Q53FE4 359 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ZBTB41Q5SVQ8 909 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 BEND3Q5T5X7 828 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 ICE2Q659A1 982 aa4.64□□□□□ -1.67
LIG3-211ENST00000588713 HEATR6Q6AI08 1181 aaKnown RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms