RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CCAR2Q8N163 923 aaKnown RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 XXYLT1Q8NBI6 393 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 RDH13Q8NBN7 331 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 NEK11Q8NG66 645 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 TMEM174Q8WUU8 243 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 PRPF31Q8WWY3 499 aaKnown RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 SLC35C1Q96A29 364 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 LENG1Q96BZ8 264 aaPredicted RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 ZBTB10Q96DT7 871 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 IQCDQ96DY2 449 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 JPH2Q9BR39 696 aaPredicted RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 C16orf70Q9BSU1 422 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 FAM207AQ9NSI2 230 aaPredicted RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 AGPAT5Q9NUQ2 364 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 SUCLA2Q9P2R7 463 aaPredicted RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 GABRQQ9UN88 632 aa11.49□□□□□ -0.57
SS18-217ENST00000580958 GNEQ9Y223 722 aaKnown RBP11.49□□□□□ -0.57
SS18-217ENST00000580958 A0A1W2PQJ5 194 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 SOWAHDA6NJG2 315 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 USP27XA6NNY8 438 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 HNRNPDLO14979 420 aaKnown RBP11.48□□□□□ -0.57
SS18-217ENST00000580958 ADCY3O60266 1144 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 C22orf31O95567 290 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 IGHA2P01877 340 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 ADRB2P07550 413 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 KRT13P13646 458 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 CNGA1P29973 690 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 ADSSP30520 456 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 CLCN3P51790 818 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 ZBED6P86452 979 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 LAMTOR4Q0VGL1 99 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 STRN3Q13033 797 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 MTF1Q14872 753 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 DGKDQ16760 1214 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 E4F1Q66K89 784 aaPredicted RBP11.48□□□□□ -0.57
SS18-217ENST00000580958 EFCAB12Q6NXP0 572 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 RAD9BQ6WBX8 426 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 TLK2Q86UE8 772 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 OR8K1Q8NGG5 319 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 PSPC1Q8WXF1 523 aaKnown RBP11.48□□□□□ -0.57
SS18-217ENST00000580958 KCNN1Q92952 543 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 SAAL1Q96ER3 474 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 DNAJC7Q99615 494 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 NAA15Q9BXJ9 866 aaKnown RBP11.48□□□□□ -0.57
SS18-217ENST00000580958 TMEM134Q9H6X4 195 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 TRMT1Q9NXH9 659 aaKnown RBP11.48□□□□□ -0.57
SS18-217ENST00000580958 ZNF215Q9UL58 517 aaPredicted RBP11.48□□□□□ -0.57
SS18-217ENST00000580958 USP20Q9Y2K6 914 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 BOLA1Q9Y3E2 137 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 COL1A2P08123 1366 aa11.48□□□□□ -0.57
SS18-217ENST00000580958 PHLPP2Q6ZVD8 1323 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 H3BRB1 525 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 K7ERI5 159 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 MAPK13O15264 365 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 NOL4O94818 638 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 TBC1D8O95759 1140 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 PIGRP01833 764 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 EDN1P05305 212 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 SRGAP2CP0DJJ0 459 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 GARTP22102 1010 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 SCP2P22307 547 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 LIG4P49917 911 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 APLP1P51693 650 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 LACTBP83111 547 aaPredicted RBP11.47□□□□□ -0.57
SS18-217ENST00000580958 APBA1Q02410 837 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 BFSP1Q12934 665 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 PPFIA1Q13136 1202 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 TSR1Q2NL82 804 aaKnown RBP11.47□□□□□ -0.57
SS18-217ENST00000580958 BRDTQ58F21 947 aaPredicted RBP11.47□□□□□ -0.57
SS18-217ENST00000580958 PDXDC1Q6P996 788 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 GBP6Q6ZN66 633 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 TOGARAM2Q6ZUX3 1019 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 INTS8Q75QN2 995 aaKnown RBP11.47□□□□□ -0.57
SS18-217ENST00000580958 TMTC1Q8IUR5 882 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 METTL13Q8N6R0 699 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 EFCAB3Q8N7B9 438 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 TRPV1Q8NER1 839 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 POMGNT1Q8WZA1 660 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 EDEM3Q9BZQ6 932 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 GANQ9H2C0 597 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 TUT1Q9H6E5 874 aaKnown RBP11.47□□□□□ -0.57
SS18-217ENST00000580958 KCND1Q9NSA2 647 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 CITO14578 2027 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 TRIP11Q15643 1979 aa11.47□□□□□ -0.57
SS18-217ENST00000580958 A6NJR5 290 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 MAGEB2O15479 319 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 GJB1P08034 283 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 ACTN1P12814 892 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 SLC9A1P19634 815 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 KLRC1P26715 233 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 FMO5P49326 533 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 FLT3LGP49771 235 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 VAMP7P51809 220 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 MYL7Q01449 175 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CAP1Q01518 475 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 TFDP1Q14186 410 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 MXD4Q14582 209 aaPredicted RBP11.46□□□□□ -0.57
SS18-217ENST00000580958 EXOC3L4Q17RC7 722 aa11.46□□□□□ -0.57
SS18-217ENST00000580958 CDCA2Q69YH5 1023 aaPredicted RBP11.46□□□□□ -0.57
SS18-217ENST00000580958 DPY19L2P1Q6NXN4 242 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms