RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 KIFC3Q9BVG8 833 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 GZF1Q9H116 711 aaPredicted RBP17.08■□□□□ 0.32
SS18-216ENST00000580751 CHST12Q9NRB3 414 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 AGPAT5Q9NUQ2 364 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 RMND1Q9NWS8 449 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 MICAL3Q7RTP6 2002 aa17.08■□□□□ 0.32
SS18-216ENST00000580751 SYCE3A1L190 88 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 DENND3A2RUS2 1198 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 K7ENM7 598 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 SLC16A4O15374 487 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 AXLP30530 894 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 SARSP49591 514 aaKnown RBP17.07■□□□□ 0.32
SS18-216ENST00000580751 NCKAP1LP55160 1127 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 WDR5P61964 334 aaKnown RBP17.07■□□□□ 0.32
SS18-216ENST00000580751 DPYDQ12882 1025 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 FAM187BQ17R55 369 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 CT47A1Q5JQC4 288 aaPredicted RBP17.07■□□□□ 0.32
SS18-216ENST00000580751 RASIP1Q5U651 963 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 TMEM161BQ8NDZ6 487 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 KCNN1Q92952 543 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 SMARCE1Q969G3 411 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 CCDC47Q96A33 483 aaKnown RBP17.07■□□□□ 0.32
SS18-216ENST00000580751 CCDC113Q9H0I3 377 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 TSPYL2Q9H2G4 693 aaPredicted RBP17.07■□□□□ 0.32
SS18-216ENST00000580751 TMX1Q9H3N1 280 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 FZD8Q9H461 694 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 TMEM134Q9H6X4 195 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 OLFML3Q9NRN5 406 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 C1orf112Q9NSG2 853 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 PANK4Q9NVE7 773 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 PIN4Q9Y237 131 aaKnown RBP17.07■□□□□ 0.32
SS18-216ENST00000580751 SLC4A7Q9Y6M7 1214 aa17.07■□□□□ 0.32
SS18-216ENST00000580751 CNTNAP2Q9UHC6 1331 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.06■□□□□ 0.32
SS18-216ENST00000580751 PVALEFA0A1B0GWK0 134 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 K7ERI5 159 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 TSPAN1O60635 241 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 AMHP03971 560 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 PRKCBP05771 671 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 MAPTP10636 758 aaKnown RBP17.06■□□□□ 0.32
SS18-216ENST00000580751 STRN3Q13033 797 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 KCNB1Q14721 858 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 AMHR2Q16671 573 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 HERC4Q5GLZ8 1057 aaPredicted RBP17.06■□□□□ 0.32
SS18-216ENST00000580751 UNC13DQ70J99 1090 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 SFR1Q86XK3 245 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 GRAMD1CQ8IYS0 662 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 CCDC51Q96ER9 411 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 SLC9A7Q96T83 725 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 ADAM2Q99965 735 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 FUCA2Q9BTY2 467 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 BLZF1Q9H2G9 400 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 ANO10Q9NW15 660 aa17.06■□□□□ 0.32
SS18-216ENST00000580751 RNF216Q9NWF9 866 aaPredicted RBP17.06■□□□□ 0.32
SS18-216ENST00000580751 CXXC1Q9P0U4 656 aaPredicted RBP17.06■□□□□ 0.32
SS18-216ENST00000580751 ACKR2O00590 384 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 COASYQ13057 564 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 PRPF4BQ13523 1007 aaKnown RBP17.05■□□□□ 0.32
SS18-216ENST00000580751 CUL4BQ13620 913 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 DSC3Q14574 896 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 NOTUMQ6P988 496 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 HAUS6Q7Z4H7 955 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 PHOSPHO2Q8TCD6 241 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 LINC01599Q8WXQ3 324 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 ST6GALNAC4Q9H4F1 302 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 MRPL44Q9H9J2 332 aaKnown RBP17.05■□□□□ 0.32
SS18-216ENST00000580751 RGS18Q9NS28 235 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 COLQQ9Y215 455 aaPredicted RBP17.05■□□□□ 0.32
SS18-216ENST00000580751 PCDHA5Q9Y5H7 936 aa17.05■□□□□ 0.32
SS18-216ENST00000580751 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.04■□□□□ 0.32
SS18-216ENST00000580751 ENPP3O14638 875 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 B4GALT5O43286 388 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 MGEA5O60502 916 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 ARF4P18085 180 aaPredicted RBP17.04■□□□□ 0.32
SS18-216ENST00000580751 RAB27AP51159 221 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 PNOCQ13519 176 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 ALCAMQ13740 583 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 STX1AQ16623 288 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 TMEM132AQ24JP5 1023 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 TWF2Q6IBS0 349 aaKnown RBP17.04■□□□□ 0.32
SS18-216ENST00000580751 STXBP4Q6ZWJ1 553 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 SLC24A5Q71RS6 500 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 PIAS4Q8N2W9 510 aaPredicted RBP17.04■□□□□ 0.32
SS18-216ENST00000580751 HVCN1Q96D96 273 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 FIZ1Q96SL8 496 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 TRAIPQ9BWF2 469 aa17.04■□□□□ 0.32
SS18-216ENST00000580751 MRPL4Q9BYD3 311 aaKnown RBP17.04■□□□□ 0.32
SS18-216ENST00000580751 LAMA3Q16787 3333 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 SKIP12755 728 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 ATP2A2P16615 1042 aaKnown RBP17.03■□□□□ 0.32
SS18-216ENST00000580751 CASP1P29466 404 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 NMT1P30419 496 aaKnown RBP17.03■□□□□ 0.32
SS18-216ENST00000580751 HOXA11P31270 313 aaPredicted RBP17.03■□□□□ 0.32
SS18-216ENST00000580751 PPP1R2P41236 205 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 NLRP12P59046 1061 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 DEFB103AP81534 67 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 GTF2BQ00403 316 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 TYRO3Q06418 890 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 FAM26FQ5R3K3 315 aa17.03■□□□□ 0.32
SS18-216ENST00000580751 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms