RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 ING3Q9NXR8 418 aa8.66□□□□□ -1.02
SS18-214ENST00000580003 K7ESF4 209 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 LTA4HP09960 611 aaKnown RBP8.65□□□□□ -1.02
SS18-214ENST00000580003 CDKN1CP49918 316 aaPredicted RBP8.65□□□□□ -1.02
SS18-214ENST00000580003 GUCY2FP51841 1108 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 ERVK-21P61565 698 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 MEF2AQ02078 507 aaPredicted RBP8.65□□□□□ -1.02
SS18-214ENST00000580003 FOXL1Q12952 345 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 TOR2AQ5JU69 321 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 FAM111BQ6SJ93 734 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 WWC2-AS2Q96NR7 200 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 MPHOSPH9Q99550 1183 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 GPR20Q99678 358 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 MENTQ9BUN1 341 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 C1QTNF3Q9BXJ4 246 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 DNAJC28Q9NX36 388 aa8.65□□□□□ -1.02
SS18-214ENST00000580003 ALG1L2C9J202 215 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 MUSKO15146 869 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 PRAMEF4O60810 478 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 ACO1P21399 889 aaKnown RBP8.64□□□□□ -1.03
SS18-214ENST00000580003 GPR3P46089 330 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 KLF1Q13351 362 aaPredicted RBP8.64□□□□□ -1.03
SS18-214ENST00000580003 PTPROQ16827 1216 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 AMOTL1Q8IY63 956 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 PRPF38AQ8NAV1 312 aaKnown RBP8.64□□□□□ -1.03
SS18-214ENST00000580003 ADOQ96SZ5 270 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 SHROOM4Q9ULL8 1493 aa8.64□□□□□ -1.03
SS18-214ENST00000580003 SRSF2Q01130 221 aaKnown RBP8.63□□□□□ -1.03
SS18-214ENST00000580003 PRKD1Q15139 912 aaPredicted RBP8.63□□□□□ -1.03
SS18-214ENST00000580003 UBE3CQ15386 1083 aa8.63□□□□□ -1.03
SS18-214ENST00000580003 MUM1Q2TAK8 710 aa8.63□□□□□ -1.03
SS18-214ENST00000580003 SGMS1Q86VZ5 419 aa8.63□□□□□ -1.03
SS18-214ENST00000580003 PALM2Q8IXS6 379 aa8.63□□□□□ -1.03
SS18-214ENST00000580003 IFT122Q9HBG6 1241 aa8.63□□□□□ -1.03
SS18-214ENST00000580003 CCM2LQ9NUG4 571 aaPredicted RBP8.63□□□□□ -1.03
SS18-214ENST00000580003 JAG2Q9Y219 1238 aa8.63□□□□□ -1.03
SS18-214ENST00000580003 WNT3AP56704 352 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 DUSP2Q05923 314 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 ITKQ08881 620 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 FAM50AQ14320 339 aaKnown RBP8.62□□□□□ -1.03
SS18-214ENST00000580003 MSL3Q8N5Y2 521 aaKnown RBP8.62□□□□□ -1.03
SS18-214ENST00000580003 OR5M3Q8NGP4 307 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 EDAQ92838 391 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 KRTAP3-1Q9BYR8 98 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 ZBTB21Q9ULJ3 1066 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 TSC22D4Q9Y3Q8 395 aa8.62□□□□□ -1.03
SS18-214ENST00000580003 SLC5A3P53794 718 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 CCT2P78371 535 aaKnown RBP8.61□□□□□ -1.03
SS18-214ENST00000580003 C19orf54Q5BKX5 351 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 FKBP15Q5T1M5 1219 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 MFSD5Q6N075 450 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 MAMDC4Q6UXC1 1216 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 Q6ZSN1 163 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 KCNK18Q7Z418 384 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 ZNF808Q8N4W9 903 aaPredicted RBP8.61□□□□□ -1.03
SS18-214ENST00000580003 TSPEARQ8WU66 669 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 FATE1Q969F0 183 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 ACE2Q9BYF1 805 aaPredicted RBP8.61□□□□□ -1.03
SS18-214ENST00000580003 BRINP2Q9C0B6 783 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 EPC1Q9H2F5 836 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 TLR9Q9NR96 1032 aa8.61□□□□□ -1.03
SS18-214ENST00000580003 CAPN14A8MX76 684 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 GYPEP15421 78 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 EVA1CP58658 441 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 FAM180AQ6UWF9 173 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 BTNL9Q6UXG8 535 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 ANKRD35Q8N283 1001 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 GLB1L3Q8NCI6 653 aaPredicted RBP8.6□□□□□ -1.03
SS18-214ENST00000580003 SNX33Q8WV41 574 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 MTMR8Q96EF0 704 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 BORCS6Q96GS4 357 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 TRIM8Q9BZR9 551 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 SH3BP1Q9Y3L3 701 aa8.6□□□□□ -1.03
SS18-214ENST00000580003 CYP27B1O15528 508 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 TMEM127O75204 238 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 CFBP00751 764 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 CTSSP25774 331 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 HIBADHP31937 336 aaKnown RBP8.59□□□□□ -1.03
SS18-214ENST00000580003 CASRP41180 1078 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 CLUL1Q15846 466 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 ANO4Q32M45 955 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 SYDE2Q5VT97 1194 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 PGM2L1Q6PCE3 622 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 ABHD15Q6UXT9 468 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 TRHDEQ9UKU6 1024 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 TESMINQ9Y4I5 508 aa8.59□□□□□ -1.03
SS18-214ENST00000580003 RPTORQ8N122 1335 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 LOC105371045A0A1W2PR82 267 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 PHF2O75151 1096 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 KATNA1O75449 491 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 OSMP13725 252 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 MTMR1Q13613 665 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 ELAVL1Q15717 326 aaKnown RBP8.58□□□□□ -1.04
SS18-214ENST00000580003 MUM1L1Q5H9M0 696 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 MIEF2Q96C03 454 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 ZNF512Q96ME7 567 aaPredicted RBP8.58□□□□□ -1.04
SS18-214ENST00000580003 NOP58Q9Y2X3 529 aaKnown RBP8.58□□□□□ -1.04
SS18-214ENST00000580003 GPR45Q9Y5Y3 372 aa8.58□□□□□ -1.04
SS18-214ENST00000580003 AKR1B10O60218 316 aa8.57□□□□□ -1.04
SS18-214ENST00000580003 MFAP3LO75121 409 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms