RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 PIGOQ8TEQ8 1089 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 RMDN1Q96DB5 314 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 DYDC2Q96IM9 177 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 ZDHHC15Q96MV8 337 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 TIPINQ9BVW5 301 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 PUS7LQ9H0K6 701 aaKnown RBP3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 FOXP1Q9H334 677 aaPredicted RBP3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 LRRC4BQ9NT99 713 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 NCDNQ9UBB6 729 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 MRPS23Q9Y3D9 190 aaKnown RBP3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 SNX9Q9Y5X1 595 aa3.14□□□□□ -1.91
SMCHD1-203ENST00000577880 TET3O43151 1660 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ADGRB3O60242 1522 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 H3BRB1 525 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 MCF2LO15068 1137 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 DNAJC6O75061 913 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 COBLO75128 1261 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 POMCP01189 267 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 IGHDP01880 384 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 HMBSP08397 361 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 CKBP12277 381 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 IFNAR1P17181 557 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 LBX1P52954 281 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 FKBP3Q00688 224 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PDE1BQ01064 536 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ASPHQ12797 758 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 SGCGQ13326 291 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ACVR2BQ13705 512 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 BYSLQ13895 437 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TMED2Q15363 201 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 UVSSAQ2YD98 709 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 C12orf60Q5U649 245 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PPP2R2DQ66LE6 453 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 SDCCAG8Q86SQ7 713 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF557Q8N988 423 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 KCTD6Q8NC69 237 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 NSUN4Q96CB9 384 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 GPRASP2Q96D09 838 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 EPSTI1Q96J88 318 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 KRT12Q99456 494 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM213AQ9BRX8 229 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 MTA3Q9BTC8 594 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PLA2G12BQ9BX93 195 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 FTHL17Q9BXU8 183 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 CIPCQ9C0C6 399 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 DNAJC25Q9H1X3 360 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TUT1Q9H6E5 874 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 VPS37BQ9H9H4 285 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 SLTMQ9NWH9 1034 aaKnown RBP eCLIP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 MTMR4Q9NYA4 1195 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TAB2Q9NYJ8 693 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 DSEQ9UL01 958 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 UBQLN1Q9UMX0 589 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 AGAP1Q9UPQ3 857 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 UTP11Q9Y3A2 253 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 BZW2Q9Y6E2 419 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 MARF1Q9Y4F3 1742 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 I3L4J1 428 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 GPR25O00155 361 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PPFIA2O75334 1257 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 GPC4O75487 556 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF202O95125 648 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 AFPP02771 609 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TCF7P36402 384 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TUBB4BP68371 445 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 DAB2P98082 770 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 CACNB1Q02641 598 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 MKRN4PQ13434 485 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PPP2R5EQ16537 467 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 C10orf120Q5SQS8 335 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 FKBP1CQ5VVH2 108 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ADCK2Q7Z695 626 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 CCDC13Q8IYE1 715 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TEKT4Q8WW24 435 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 HSPH1Q92598 858 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 AHCYL2Q96HN2 611 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 SPATA16Q9BXB7 569 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 C1QTNF7Q9BXJ2 289 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 FSD1LQ9BXM9 530 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 NFKBIZQ9BYH8 718 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ATXN3LQ9H3M9 355 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 HIPK3Q9H422 1215 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 CHST12Q9NRB3 414 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ABI2Q9NYB9 513 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 UXTQ9UBK9 157 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 SEL1LQ9UBV2 794 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 AGO2Q9UKV8 859 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 NUP188Q5SRE5 1749 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TNS1Q9HBL0 1735 aaKnown RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 EMSYQ7Z589 1322 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 GPR75-ASB3A0A0A6YYF3 556 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 KANSL1LA0AUZ9 987 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 SMIM23A6NLE4 172 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PER1O15534 1290 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 DYRK3O43781 588 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 PFKFB2O60825 505 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF189O75820 626 aaPredicted RBP3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 TUBB4AP04350 444 aa3.13□□□□□ -1.91
SMCHD1-203ENST00000577880 GHRP10912 638 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms