RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 WFS1O76024 890 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 KRT15P19012 456 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 ABCB4P21439 1286 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 AGXTP21549 392 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 ETV3P41162 512 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 IRF9Q00978 393 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 POU5F1Q01860 360 aaKnown RBP6.84□□□□□ -1.31
VPS53-219ENST00000576019 NHLH1Q02575 133 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 TESK1Q15569 626 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 E4F1Q66K89 784 aaPredicted RBP6.84□□□□□ -1.31
VPS53-219ENST00000576019 CWF19L1Q69YN2 538 aaKnown RBP6.84□□□□□ -1.31
VPS53-219ENST00000576019 C16orf59Q7L2K0 433 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 SMYD4Q8IYR2 804 aaPredicted RBP6.84□□□□□ -1.31
VPS53-219ENST00000576019 GPC2Q8N158 579 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 VWA5B2Q8N398 1253 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 ZNF610Q8N9Z0 462 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 KCNJ15Q99712 375 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 TMPRSS13Q9BYE2 586 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 PCIF1Q9H4Z3 704 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 GPATCH2Q9NW75 528 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 TUBD1Q9UJT1 453 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 GGA1Q9UJY5 639 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 GPR52Q9Y2T5 361 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 RABGAP1Q9Y3P9 1069 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 TRIM17Q9Y577 477 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 PCDHA2Q9Y5H9 948 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 MAST4O15021 2626 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 SPTBN4Q9H254 2564 aa6.84□□□□□ -1.31
VPS53-219ENST00000576019 WDFY4Q6ZS81 3184 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 SLC12A8A0AV02 714 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 FAM47E-STBD1D6RA91 191 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 H3BML4 177 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 hCG_1984214I3L0E3 225 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 POLRMTO00411 1230 aaKnown RBP6.83□□□□□ -1.32
VPS53-219ENST00000576019 KPNA5O15131 536 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 LILRB5O75023 590 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 NDUFS2O75306 463 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 UBXN7O94888 489 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 DRD2P14416 443 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 PDE6AP16499 860 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 DDIT3P35638 169 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 PPM1AP35813 382 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 CTSKP43235 329 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 ASPAP45381 313 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 SEPHS1P49903 392 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 TNFAIP2Q03169 654 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 BTKQ06187 659 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 ACAP1Q15027 740 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 CRY1Q16526 586 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 CCDC93Q567U6 631 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 RNF220Q5VTB9 566 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 SYDE1Q6ZW31 735 aaPredicted RBP6.83□□□□□ -1.32
VPS53-219ENST00000576019 OTOP3Q7RTS5 596 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 KSR1Q8IVT5 923 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 HTATIP2Q9BUP3 242 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 GLIS2Q9BZE0 524 aaPredicted RBP6.83□□□□□ -1.32
VPS53-219ENST00000576019 MYLK2Q9H1R3 596 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 POGKQ9P215 609 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 PGAP2Q9UHJ9 254 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 TPX2Q9ULW0 747 aaKnown RBP6.83□□□□□ -1.32
VPS53-219ENST00000576019 NRXN2Q9P2S2 1712 aa6.83□□□□□ -1.32
VPS53-219ENST00000576019 M0R3H8 397 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 GOLIM4O00461 696 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 SNX2O60749 519 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 SLITRK5O94991 958 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 WISP1O95388 367 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 ZBTB48P10074 688 aaPredicted RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 PDCP20941 246 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 TNFSF4P23510 183 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 PIK3CBP42338 1070 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 JAM2P57087 298 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 ALDH6A1Q02252 535 aaKnown RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 TBX2Q13207 712 aaPredicted RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 DUOXA2Q1HG44 320 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 TMEM31Q5JXX7 168 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 PPP4R3AQ6IN85 833 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 TLDC1Q6P9B6 456 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 NPNTQ6UXI9 565 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 USP45Q70EL2 814 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 RSRC2Q7L4I2 434 aaKnown RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 UBE2Q1Q7Z7E8 422 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 KIAA0319LQ8IZA0 1049 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 PPM1NQ8N819 430 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 PANK1Q8TE04 598 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 NSUN6Q8TEA1 469 aaKnown RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 C1GALT1C1Q96EU7 318 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 TBATAQ96M53 351 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 UHRF1Q96T88 793 aaPredicted RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 ZMAT4Q9H898 229 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 CERS4Q9HA82 394 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 SP110Q9HB58 689 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 SMURF1Q9HCE7 757 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 DMRT3Q9NQL9 472 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 ZNF277Q9NRM2 450 aaPredicted RBP6.82□□□□□ -1.32
VPS53-219ENST00000576019 FAM105AQ9NUU6 356 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 FBXL7Q9UJT9 491 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 EDARQ9UNE0 448 aa6.82□□□□□ -1.32
VPS53-219ENST00000576019 MON2Q7Z3U7 1717 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 NFAT5O94916 1531 aa6.81□□□□□ -1.32
VPS53-219ENST00000576019 GPR179Q6PRD1 2367 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms