RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 URGCPQ8TCY9 931 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 PSPC1Q8WXF1 523 aaKnown RBP23.56■■□□□ 1.36
VPS53-216ENST00000574029 TMEM143Q96AN5 459 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 GBP3Q9H0R5 595 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 MINDY3Q9H8M7 445 aa23.56■■□□□ 1.36
VPS53-216ENST00000574029 CCNT1O60563 726 aaKnown RBP23.55■■□□□ 1.36
VPS53-216ENST00000574029 DDHD2O94830 711 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 BRD1O95696 1058 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 PDGFBP01127 241 aaPredicted RBP23.55■■□□□ 1.36
VPS53-216ENST00000574029 SRGAP2CP0DJJ0 459 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 XBP1P17861 261 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 YWHABP31946 246 aaKnown RBP23.55■■□□□ 1.36
VPS53-216ENST00000574029 PTPN14Q15678 1187 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 PPFIBP1Q86W92 1011 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 ZDHHC14Q8IZN3 488 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 OXER1Q8TDS5 423 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 NAP1L4Q99733 375 aaKnown RBP23.55■■□□□ 1.36
VPS53-216ENST00000574029 LXNQ9BS40 222 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 TMEM175Q9BSA9 504 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 RSAD1Q9HA92 442 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 GJB4Q9NTQ9 266 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 KANSL3Q9P2N6 904 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 STK39Q9UEW8 545 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 CNTNAP2Q9UHC6 1331 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 MYO10Q9HD67 2058 aa23.55■■□□□ 1.36
VPS53-216ENST00000574029 GAS2O43903 313 aaKnown RBP23.54■■□□□ 1.36
VPS53-216ENST00000574029 AFF1P51825 1210 aaKnown RBP23.54■■□□□ 1.36
VPS53-216ENST00000574029 SPIRE1Q08AE8 756 aa23.54■■□□□ 1.36
VPS53-216ENST00000574029 PIK3AP1Q6ZUJ8 805 aa23.54■■□□□ 1.36
VPS53-216ENST00000574029 OTUD6AQ7L8S5 288 aa23.54■■□□□ 1.36
VPS53-216ENST00000574029 TDRD5Q8NAT2 981 aaKnown RBP23.54■■□□□ 1.36
VPS53-216ENST00000574029 TCP11Q8WWU5 503 aa23.54■■□□□ 1.36
VPS53-216ENST00000574029 RGL1Q9NZL6 768 aa23.54■■□□□ 1.36
VPS53-216ENST00000574029 USTQ9Y2C2 406 aa23.54■■□□□ 1.36
VPS53-216ENST00000574029 ASAP2O43150 1006 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 PFKFB2O60825 505 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 ALDH2P05091 517 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 NUBP1P53384 320 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 EMC2Q15006 297 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 FERMT3Q86UX7 667 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 CABP7Q86V35 215 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 POTEDQ86YR6 584 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 PLCD3Q8N3E9 789 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 KLHL5Q96PQ7 755 aa23.53■■□□□ 1.36
VPS53-216ENST00000574029 BMP2KQ9NSY1 1161 aaPredicted RBP23.53■■□□□ 1.36
VPS53-216ENST00000574029 DBR1Q9UK59 544 aaKnown RBP23.53■■□□□ 1.36
VPS53-216ENST00000574029 LILRB3O75022 631 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 NCLP19338 710 aaKnown RBP23.52■■□□□ 1.36
VPS53-216ENST00000574029 EARS2Q5JPH6 523 aaKnown RBP23.52■■□□□ 1.36
VPS53-216ENST00000574029 NCAPH2Q6IBW4 605 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 RNF149Q8NC42 400 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 FEZF2Q8TBJ5 459 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 DYDC2Q96IM9 177 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 EMILIN2Q9BXX0 1053 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 IRF2BPLQ9H1B7 796 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 ZSWIM4Q9H7M6 989 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 SFXN1Q9H9B4 322 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 TPCN1Q9ULQ1 816 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 FAN1Q9Y2M0 1017 aa23.52■■□□□ 1.36
VPS53-216ENST00000574029 ZDBF2Q9HCK1 2354 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 ZBTB39O15060 712 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 MARCH6O60337 910 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 CTDNEP1O95476 244 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 ASGR2P07307 311 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 CLCN4P51793 760 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 PCBP1Q15365 356 aaKnown RBP eCLIP23.51■■□□□ 1.35
VPS53-216ENST00000574029 XKR9Q5GH70 373 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 TMC5Q6UXY8 1006 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 GPR149Q86SP6 731 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 SLFN12Q8IYM2 578 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 SMG8Q8ND04 991 aaKnown RBP23.51■■□□□ 1.35
VPS53-216ENST00000574029 CNNM3Q8NE01 707 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 FAM193BQ96PV7 902 aaPredicted RBP23.51■■□□□ 1.35
VPS53-216ENST00000574029 MTRQ99707 1265 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 SMOC2Q9H3U7 446 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 UBN1Q9NPG3 1134 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 PPP4R2Q9NY27 417 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 LIMD1Q9UGP4 676 aa23.51■■□□□ 1.35
VPS53-216ENST00000574029 NRP1O14786 923 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 INPPL1O15357 1258 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 DTNBO60941 627 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 BAG4O95429 457 aaKnown RBP23.5■■□□□ 1.35
VPS53-216ENST00000574029 POMCP01189 267 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 CNPP09543 421 aaKnown RBP23.5■■□□□ 1.35
VPS53-216ENST00000574029 KLRC2P26717 231 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 CTTNQ14247 550 aaKnown RBP23.5■■□□□ 1.35
VPS53-216ENST00000574029 XPNPEP1Q9NQW7 623 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 C2orf16Q68DN1 1984 aa23.5■■□□□ 1.35
VPS53-216ENST00000574029 FAM205CA6NFA0 338 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 SLITRK3O94933 977 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 SSBP05455 408 aaKnown RBP eCLIP23.49■■□□□ 1.35
VPS53-216ENST00000574029 ITGA4P13612 1032 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 AXLP30530 894 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 PTENP60484 403 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 CYP4A11Q02928 519 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 MRPL17Q9NRX2 175 aaKnown RBP23.49■■□□□ 1.35
VPS53-216ENST00000574029 MARCH5Q9NX47 278 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 IPPQ9Y573 584 aa23.49■■□□□ 1.35
VPS53-216ENST00000574029 TSPAN1O60635 241 aa23.48■■□□□ 1.35
VPS53-216ENST00000574029 ERLIN2O94905 339 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms