RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CASP10Q92851 521 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 TMEM143Q96AN5 459 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 PBXIP1Q96AQ6 731 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 FAM20AQ96MK3 541 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 NLRP4Q96MN2 994 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 MRPL9Q9BYD2 267 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 ADAM7Q9H2U9 754 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 PDRG1Q9NUG6 133 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 PIN4Q9Y237 131 aaKnown RBP7.53□□□□□ -1.2
VPS53-213ENST00000572334 PCDHB2Q9Y5E7 798 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 COL4A3BPQ9Y5P4 624 aa7.53□□□□□ -1.2
VPS53-213ENST00000572334 CPLX1O14810 134 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 TBX3O15119 743 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 INPPL1O15357 1258 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 SLITRK3O94933 977 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 BRD1O95696 1058 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 CXCL14O95715 111 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 SFPQP23246 707 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS53-213ENST00000572334 ALDH7A1P49419 539 aaKnown RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 DNM2P50570 870 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 POLGP54098 1239 aaPredicted RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 LAMTOR4Q0VGL1 99 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 NR5A1Q13285 461 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 CTTNQ14247 550 aaKnown RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 PTPN14Q15678 1187 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 AMHR2Q16671 573 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 PIK3AP1Q6ZUJ8 805 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 CATSPER4Q7RTX7 472 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 NEK8Q86SG6 692 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 FERMT3Q86UX7 667 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 RNF168Q8IYW5 571 aaPredicted RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 PRPF31Q8WWY3 499 aaKnown RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 TMEM169Q96HH4 297 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 DYDC2Q96IM9 177 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 SCLT1Q96NL6 688 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 LXNQ9BS40 222 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 EIF2AQ9BY44 585 aaKnown RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 BMP2KQ9NSY1 1161 aaPredicted RBP7.52□□□□□ -1.21
VPS53-213ENST00000572334 MARCH5Q9NX47 278 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 MIOSQ9NXC5 875 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 INPP5FQ9Y2H2 1132 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 CACNA1IQ9P0X4 2223 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 FANCMQ8IYD8 2048 aa7.52□□□□□ -1.21
VPS53-213ENST00000572334 DCHS1Q96JQ0 3298 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 MYH15Q9Y2K3 1946 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 CCDC194A0A1B0GVG4 234 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 F8W810 466 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 CCNT1O60563 726 aaKnown RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 TSPAN1O60635 241 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 SRGAP2CP0DJJ0 459 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 SRGAP2BP0DMP2 458 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 GCFC2P16383 781 aaKnown RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 NCLP19338 710 aaKnown RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 AVPR2P30518 371 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 YWHABP31946 246 aaKnown RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 RAB27AP51159 221 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 CLCN4P51793 760 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 AK2P54819 239 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 PTENP60484 403 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 ITIH3Q06033 890 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 EMC2Q15006 297 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 ME3Q16798 604 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 TPRNQ4KMQ1 711 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 RARS2Q5T160 578 aaKnown RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 KIAA1841Q6NSI8 718 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 POTEGQ6S5H5 508 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 GLB1LQ6UWU2 654 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 TAS1R1Q7RTX1 841 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 SRGAP1Q7Z6B7 1085 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 IFNLR1Q8IU57 520 aaPredicted RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 NECAB1Q8N987 351 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 KREMEN2Q8NCW0 462 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 GSTCDQ8NEC7 633 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 ASAP3Q8TDY4 903 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 RSPH1Q8WYR4 309 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 CEP170P1Q96L14 293 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 RIPOR3Q96MK2 946 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 KLHL5Q96PQ7 755 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 HSD17B14Q9BPX1 270 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 JPH2Q9BR39 696 aaPredicted RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 INO80BQ9C086 356 aaPredicted RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 SLKQ9H2G2 1235 aaPredicted RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 ORC3Q9UBD5 711 aaPredicted RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 PPME1Q9Y570 386 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 GVINP1Q7Z2Y8 2422 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 PDCD11Q14690 1871 aaKnown RBP7.51□□□□□ -1.21
VPS53-213ENST00000572334 CITO14578 2027 aa7.51□□□□□ -1.21
VPS53-213ENST00000572334 MYH11P35749 1972 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 A0A087WWV3 80 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 NRP1O14786 923 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 N4BP1O75113 896 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 LYPLA2O95372 231 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 PAPLNO95428 1278 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 POMCP01189 267 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 ASGR2P07307 311 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 CNPP09543 421 aaKnown RBP7.5□□□□□ -1.21
VPS53-213ENST00000572334 SKIP12755 728 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 ARL2P36404 184 aa7.5□□□□□ -1.21
VPS53-213ENST00000572334 RFC5P40937 340 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms