RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CHD8Q9HCK8 2581 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 BAHCC1Q9P281 2608 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 CACNA1IQ9P0X4 2223 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 E7EWF7 191 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 ANHXE9PGG2 379 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 SLC30A4O14863 429 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 OFD1O75665 1012 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 IGHDP01880 384 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 CD72P21854 359 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 FSHRP23945 695 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 GLUD2P49448 558 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 ADCY7P51828 1080 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 IL31Q6EBC2 164 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 ZNF746Q6NUN9 644 aaPredicted RBP12.49□□□□□ -0.41
VPS53-207ENST00000570510 TSSK4Q6SA08 328 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 MTSS1LQ765P7 747 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 NIPA1Q7RTP0 329 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 CATSPER4Q7RTX7 472 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 IGDCC4Q8TDY8 1250 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 HDAC7Q8WUI4 952 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 VN1R3Q9BXE9 311 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 NT5C3AQ9H0P0 336 aa12.49□□□□□ -0.41
VPS53-207ENST00000570510 MRPS17Q9Y2R5 130 aaKnown RBP12.49□□□□□ -0.41
VPS53-207ENST00000570510 PRG3Q9Y2Y8 225 aaPredicted RBP12.49□□□□□ -0.41
VPS53-207ENST00000570510 MTF2Q9Y483 593 aaPredicted RBP12.49□□□□□ -0.41
VPS53-207ENST00000570510 CHD6Q8TD26 2715 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 NRP1O14786 923 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 LILRB3O75022 631 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 CYP21A2P08686 494 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 RXRAP19793 462 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 OR1G1P47890 313 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 ACAP1Q15027 740 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 LAIR1Q6GTX8 287 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 PARM1Q6UWI2 310 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 RSPO2Q6UXX9 243 aaPredicted RBP12.48□□□□□ -0.41
VPS53-207ENST00000570510 GLYCTKQ8IVS8 523 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 TMEM175Q9BSA9 504 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 TRAIPQ9BWF2 469 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 PRKD2Q9BZL6 878 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 GLT8D2Q9H1C3 349 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 LTB4R2Q9NPC1 389 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 RIC8AQ9NPQ8 531 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 ZDHHC7Q9NXF8 308 aa12.48□□□□□ -0.41
VPS53-207ENST00000570510 ATRXP46100 2492 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 LILRB5O75023 590 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 DDHD2O94830 711 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 POMCP01189 267 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 OATP04181 439 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 SREBF1P36956 1147 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 AP3B2Q13367 1082 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 ERICH6BQ5W0A0 696 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 ZNF852Q6ZMS4 543 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 SYNE3Q6ZMZ3 975 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 TEX2Q8IWB9 1127 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 PLEKHM2Q8IWE5 1019 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 CELF5Q8N6W0 485 aaKnown RBP12.47□□□□□ -0.41
VPS53-207ENST00000570510 RUFY2Q8WXA3 655 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 FGF14Q92915 247 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 ZNF707Q96C28 371 aaPredicted RBP12.47□□□□□ -0.41
VPS53-207ENST00000570510 RPP25Q9BUL9 199 aaKnown RBP12.47□□□□□ -0.41
VPS53-207ENST00000570510 HERC2P3Q9BVR0 1158 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 RSAD1Q9HA92 442 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 PARD6AQ9NPB6 346 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 CDH7Q9ULB5 785 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 POLIQ9UNA4 740 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 PCDHB2Q9Y5E7 798 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 SLC12A7Q9Y666 1083 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 FANCMQ8IYD8 2048 aa12.47□□□□□ -0.41
VPS53-207ENST00000570510 A0A087WZ62 844 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 SMCO2A6NFE2 343 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 MEIS3P2A8K0S8 358 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 WDR64B1ANS9 1081 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 DHX15O43143 795 aaKnown RBP12.46□□□□□ -0.41
VPS53-207ENST00000570510 TGM5O43548 720 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 FOXD2O60548 495 aaPredicted RBP12.46□□□□□ -0.41
VPS53-207ENST00000570510 LRP3O75074 770 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 ZNF623O75123 536 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 RETP07949 1114 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 TGM1P22735 817 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 SETQ01105 290 aaPredicted RBP12.46□□□□□ -0.41
VPS53-207ENST00000570510 PRKCEQ02156 737 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 TPRG1Q6ZUI0 275 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 RHPN2Q8IUC4 686 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 LINC01465Q8N7H1 131 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 FDXACB1Q9BRP7 624 aaPredicted RBP12.46□□□□□ -0.41
VPS53-207ENST00000570510 DDX23Q9BUQ8 820 aaKnown RBP12.46□□□□□ -0.41
VPS53-207ENST00000570510 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS53-207ENST00000570510 SEMA4GQ9NTN9 838 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 FAM217BQ9NTX9 383 aaPredicted RBP12.46□□□□□ -0.41
VPS53-207ENST00000570510 C2orf16Q68DN1 1984 aa12.46□□□□□ -0.41
VPS53-207ENST00000570510 CNTNAP2Q9UHC6 1331 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 FAM86B1E9PN63 330 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 PRC1O43663 620 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 FAM86B2P0C5J1 330 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 MCM5P33992 734 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 RPS9P46781 194 aaKnown RBP12.45□□□□□ -0.42
VPS53-207ENST00000570510 ANTXR2P58335 489 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 CREMQ03060 361 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 LIN9Q5TKA1 542 aa12.45□□□□□ -0.42
VPS53-207ENST00000570510 WWC2Q6AWC2 1192 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms