RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 NT5C1BQ96P26 610 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 AGPAT1Q99943 283 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 DNAJC5Q9H3Z4 198 aa12.21□□□□□ -0.46
CLN3-238ENST00000569430 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.21□□□□□ -0.46
CLN3-238ENST00000569430 PDXKO00764 312 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 GDF11O95390 407 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 MFAP3P55082 362 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 CDR2Q01850 454 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 NPY5RQ15761 445 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 CERKLQ49MI3 558 aaPredicted RBP12.2□□□□□ -0.46
CLN3-238ENST00000569430 ATG4AQ8WYN0 398 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 CFAP57Q96MR6 1250 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 IRAK4Q9NWZ3 460 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 RAB20Q9NX57 234 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 AIPL1Q9NZN9 384 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 TRIM33Q9UPN9 1127 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 RIC1Q4ADV7 1423 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 EMSYQ7Z589 1322 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 CYP26A1O43174 497 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 TNFRSF8P28908 595 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 SSTR3P32745 418 aaPredicted RBP12.2□□□□□ -0.46
CLN3-238ENST00000569430 FMO5P49326 533 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 ICA1Q05084 483 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 QRICH1Q2TAL8 776 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 EDRF1Q3B7T1 1238 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 BBS9Q3SYG4 887 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 MIER3Q7Z3K6 550 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 TXNRD3Q86VQ6 643 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 FBXO41Q8TF61 875 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 MAML1Q92585 1016 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 TTC17Q96AE7 1141 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 TTC1Q99614 292 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 STK33Q9BYT3 514 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 hCG_1984214I3L0E3 225 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 MAP3K7O43318 606 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 ERMARDQ5T6L9 678 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 TBC1D9BQ66K14 1250 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 ZNF713Q8N859 430 aaPredicted RBP12.2□□□□□ -0.46
CLN3-238ENST00000569430 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.2□□□□□ -0.46
CLN3-238ENST00000569430 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.2□□□□□ -0.46
CLN3-238ENST00000569430 TUBGCP6Q96RT7 1819 aa12.2□□□□□ -0.46
CLN3-238ENST00000569430 DDX3XO00571 662 aaKnown RBP eCLIP12.19□□□□□ -0.463e-8■■■□□ 15.1
CLN3-238ENST00000569430 SORBS3O60504 671 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 SLC8A3P57103 927 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 YWHAGP61981 247 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLN3-238ENST00000569430 KLC1Q07866 573 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 ITIH4Q14624 930 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 HGSNATQ68CP4 663 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 PASD1Q8IV76 773 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 BBOF1Q8ND07 529 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 CCDC110Q8TBZ0 833 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 RSAD2Q8WXG1 361 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 NPHS2Q9NP85 383 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 ABCB11O95342 1321 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 TMEM253P0C7T8 217 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 CD19P15391 556 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 SLC30A10Q6XR72 485 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 SDCCAG8Q86SQ7 713 aaPredicted RBP12.19□□□□□ -0.46
CLN3-238ENST00000569430 NT5DC3Q86UY8 548 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 C1orf112Q9NSG2 853 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 FOXN3O00409 490 aaPredicted RBP12.19□□□□□ -0.46
CLN3-238ENST00000569430 GHRP10912 638 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 IRX4P78413 519 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 IZUMO3Q5VZ72 239 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 PTF1AQ7RTS3 328 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 ERICH1Q86X53 443 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 COL23A1Q86Y22 540 aaPredicted RBP12.19□□□□□ -0.46
CLN3-238ENST00000569430 SYT2Q8N9I0 419 aaPredicted RBP12.19□□□□□ -0.46
CLN3-238ENST00000569430 DAGLBQ8NCG7 672 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 POMGNT1Q8WZA1 660 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 NAF1Q96HR8 494 aaKnown RBP12.19□□□□□ -0.46
CLN3-238ENST00000569430 TMEM237Q96Q45 408 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 KLF6Q99612 283 aaPredicted RBP12.19□□□□□ -0.46
CLN3-238ENST00000569430 PNMA3Q9UL41 463 aa12.19□□□□□ -0.46
CLN3-238ENST00000569430 LMO7Q8WWI1 1683 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 RASSF9O75901 435 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 RPL21P46778 160 aaKnown RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 FNTAP49354 379 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 EPC2Q52LR7 807 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 TBC1D22AQ8WUA7 517 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 MMTAG2Q9BU76 263 aaKnown RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 CDC42EP4Q9H3Q1 356 aaKnown RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 UBN1Q9NPG3 1134 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 APEX2Q9UBZ4 518 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 CCNL1Q9UK58 526 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 CDH16O75309 829 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 MED24O75448 989 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 SERPINB6P35237 376 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 PTENP60484 403 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 PSMC6P62333 389 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 TRAF1Q13077 416 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 C2CD6Q53TS8 623 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 EAPPQ56P03 285 aaPredicted RBP12.18□□□□□ -0.46
CLN3-238ENST00000569430 XKR9Q5GH70 373 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 TRAPPC3LQ5T215 181 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 RAB3IL1Q8TBN0 382 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 DNAJC9Q8WXX5 260 aa12.18□□□□□ -0.46
CLN3-238ENST00000569430 ZNF577Q9BSK1 485 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms