RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 FERMT3Q86UX7 667 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 TMEM173Q86WV6 379 aaPredicted RBP18.8■□□□□ 0.6
CLN3-231ENST00000568422 RNF149Q8NC42 400 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 DYDC2Q96IM9 177 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 RIPOR3Q96MK2 946 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 MTRQ99707 1265 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 TMEM175Q9BSA9 504 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 PCDHA12Q9UN75 941 aa18.8■□□□□ 0.6
CLN3-231ENST00000568422 MEIS3P2A8K0S8 358 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 SLITRK3O94933 977 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 LYPLA2O95372 231 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 ALDH2P05091 517 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 AXLP30530 894 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 HOXA11P31270 313 aaPredicted RBP18.79■□□□□ 0.6
CLN3-231ENST00000568422 POU5F1BQ06416 359 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 NCBP1Q09161 790 aaKnown RBP18.79■□□□□ 0.6
CLN3-231ENST00000568422 EARS2Q5JPH6 523 aaKnown RBP18.79■□□□□ 0.6
CLN3-231ENST00000568422 ALYREFQ86V81 257 aaKnown RBP18.79■□□□□ 0.6
CLN3-231ENST00000568422 FBXL6Q8N531 539 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 TNFRSF25Q93038 417 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 CCDC51Q96ER9 411 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 FAM193BQ96PV7 902 aaPredicted RBP18.79■□□□□ 0.6
CLN3-231ENST00000568422 MINDY3Q9H8M7 445 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 RSAD1Q9HA92 442 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 DNAJB4Q9UDY4 337 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 KMT2EQ8IZD2 1858 aa18.79■□□□□ 0.6
CLN3-231ENST00000568422 ERLIN2O94905 339 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 FDPSP14324 419 aaKnown RBP18.78■□□□□ 0.6
CLN3-231ENST00000568422 NCLP19338 710 aaKnown RBP18.78■□□□□ 0.6
CLN3-231ENST00000568422 SLC11A1P49279 550 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 NR5A1Q13285 461 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 TFDP1Q14186 410 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 CTTNQ14247 550 aaKnown RBP18.78■□□□□ 0.6
CLN3-231ENST00000568422 ZNF280BQ86YH2 543 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 TPH2Q8IWU9 490 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 GTF3C6Q969F1 213 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 EMILIN2Q9BXX0 1053 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 GBP3Q9H0R5 595 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 POMKQ9H5K3 350 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 TSHZ2Q9NRE2 1034 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 ANKEF1Q9NU02 776 aa18.78■□□□□ 0.6
CLN3-231ENST00000568422 TDRD15B5MCY1 1934 aaKnown RBP18.77■□□□□ 0.6
CLN3-231ENST00000568422 DGAT1O75907 488 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 PTENP60484 403 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 CYP4A11Q02928 519 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 TRIM29Q14134 588 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 CALCRLQ16602 461 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 ATAT1Q5SQI0 421 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 UBXN11Q5T124 520 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 KIAA1841Q6NSI8 718 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 ZBTB33Q86T24 672 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 IFNLR1Q8IU57 520 aaPredicted RBP18.77■□□□□ 0.6
CLN3-231ENST00000568422 UBALD2Q8IYN6 164 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 SLC22A17Q8WUG5 538 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 BCL7CQ8WUZ0 217 aaPredicted RBP18.77■□□□□ 0.6
CLN3-231ENST00000568422 AUTS2Q8WXX7 1259 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 ASIC4Q96FT7 647 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 HSD17B14Q9BPX1 270 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 EIF2AK1Q9BQI3 630 aaKnown RBP18.77■□□□□ 0.6
CLN3-231ENST00000568422 FAN1Q9Y2M0 1017 aa18.77■□□□□ 0.6
CLN3-231ENST00000568422 MYO10Q9HD67 2058 aa18.77■□□□□ 0.59
CLN3-231ENST00000568422 ZBTB39O15060 712 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 DDHD2O94830 711 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 XRCC6P12956 609 aaKnown RBP eCLIP18.76■□□□□ 0.59
CLN3-231ENST00000568422 MRE11P49959 708 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 PTPN14Q15678 1187 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 ME3Q16798 604 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 RARS2Q5T160 578 aaKnown RBP18.76■□□□□ 0.59
CLN3-231ENST00000568422 NOTUMQ6P988 496 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 CABP7Q86V35 215 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 NECAB1Q8N987 351 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 NFKBIZQ9BYH8 718 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 TTC12Q9H892 705 aaPredicted RBP18.76■□□□□ 0.59
CLN3-231ENST00000568422 MRPL17Q9NRX2 175 aaKnown RBP18.76■□□□□ 0.59
CLN3-231ENST00000568422 BMP2KQ9NSY1 1161 aaPredicted RBP18.76■□□□□ 0.59
CLN3-231ENST00000568422 USTQ9Y2C2 406 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 SSX2IPQ9Y2D8 614 aa18.76■□□□□ 0.59
CLN3-231ENST00000568422 DENND4AQ7Z401 1863 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 FAM205CA6NFA0 338 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 INPPL1O15357 1258 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 NEMFO60524 1076 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 ITGA4P13612 1032 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 EPCAMP16422 314 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 PTPN5P54829 565 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 MTMR3Q13615 1198 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 ZDHHC14Q8IZN3 488 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 PLCD3Q8N3E9 789 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 KREMEN2Q8NCW0 462 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 SMG8Q8ND04 991 aaKnown RBP18.75■□□□□ 0.59
CLN3-231ENST00000568422 VN1R3Q9BXE9 311 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 XPNPEP1Q9NQW7 623 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 SORCS3Q9UPU3 1222 aa18.75■□□□□ 0.59
CLN3-231ENST00000568422 BTBD18B2RXH4 712 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 C2CD4DB7Z1M9 353 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 NRP1O14786 923 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 B4GALT3O60512 393 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 TSPAN1O60635 241 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 POMCP01189 267 aa18.74■□□□□ 0.59
CLN3-231ENST00000568422 SP100P23497 879 aaPredicted RBP18.74■□□□□ 0.59
CLN3-231ENST00000568422 DIS3L2Q8IYB7 885 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms