RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 STX6O43752 255 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 OFD1O75665 1012 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 CSPG5O95196 566 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 ARF4P18085 180 aaPredicted RBP16.64■□□□□ 0.25
VPS39-210ENST00000568357 AXLP30530 894 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 PTPAQ15257 358 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 CDCA2Q69YH5 1023 aaPredicted RBP16.64■□□□□ 0.25
VPS39-210ENST00000568357 AGMOQ6ZNB7 445 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 HSCBQ8IWL3 235 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 LRRC43Q8N309 656 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 COLGALT1Q8NBJ5 622 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 SMG8Q8ND04 991 aaKnown RBP16.64■□□□□ 0.25
VPS39-210ENST00000568357 RUSC1Q9BVN2 902 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 EIF2AQ9BY44 585 aaKnown RBP16.64■□□□□ 0.25
VPS39-210ENST00000568357 RNF39Q9H2S5 420 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 FZD8Q9H461 694 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 AAASQ9NRG9 546 aa16.64■□□□□ 0.25
VPS39-210ENST00000568357 TTLL13PA6NNM8 815 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 FGF18O76093 207 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 BMP15O95972 392 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 PBX3P40426 434 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 AFF1P51825 1210 aaKnown RBP16.63■□□□□ 0.25
VPS39-210ENST00000568357 TCEAL5Q5H9L2 206 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 RINT1Q6NUQ1 792 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 NOTUMQ6P988 496 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 C1orf186Q6ZWK4 172 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 CABP7Q86V35 215 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 CDR2LQ86X02 465 aaPredicted RBP16.63■□□□□ 0.25
VPS39-210ENST00000568357 DAW1Q8N136 415 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 POF1BQ8WVV4 589 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 AK8Q96MA6 479 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 CSRNP2Q9H175 543 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 NSUN3Q9H649 340 aaKnown RBP16.63■□□□□ 0.25
VPS39-210ENST00000568357 USP20Q9Y2K6 914 aa16.63■□□□□ 0.25
VPS39-210ENST00000568357 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.62■□□□□ 0.25
VPS39-210ENST00000568357 A0A1B0GUA9 196 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 LAG3P18627 525 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 NCLP19338 710 aaKnown RBP16.62■□□□□ 0.25
VPS39-210ENST00000568357 IRS1P35568 1242 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 NCBP1Q09161 790 aaKnown RBP16.62■□□□□ 0.25
VPS39-210ENST00000568357 TMEM119Q4V9L6 283 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 TIGD5Q53EQ6 642 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 KCNT2Q6UVM3 1135 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 GLB1LQ6UWU2 654 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 THNSL1Q8IYQ7 743 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 LRRC15Q8TF66 581 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 KIFAP3Q92845 792 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 PGBD4Q96DM1 585 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 FBXL18Q96ME1 805 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 KIFC3Q9BVG8 833 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 NT5C3AQ9H0P0 336 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 TBC1D13Q9NVG8 400 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 INPP5FQ9Y2H2 1132 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 HES2Q9Y543 173 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 IPPQ9Y573 584 aa16.62■□□□□ 0.25
VPS39-210ENST00000568357 HIP1RO75146 1068 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 MARCKSP29966 332 aaPredicted RBP16.61■□□□□ 0.25
VPS39-210ENST00000568357 LONP1P36776 959 aaKnown RBP16.61■□□□□ 0.25
VPS39-210ENST00000568357 UBA7P41226 1012 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 NAMPTP43490 491 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 CEBPZQ03701 1054 aaKnown RBP16.61■□□□□ 0.25
VPS39-210ENST00000568357 MAPK7Q13164 816 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 FAM187BQ17R55 369 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 NOMO2Q5JPE7 1267 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 PPP4R3CPQ6ZMV5 832 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 ZBTB8OSQ8IWT0 167 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 GJD3Q8N144 294 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 KCTD17Q8N5Z5 321 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 SYT2Q8N9I0 419 aaPredicted RBP16.61■□□□□ 0.25
VPS39-210ENST00000568357 DEPTORQ8TB45 409 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 CCDC51Q96ER9 411 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 IFT74Q96LB3 600 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 ZNF558Q96NG5 402 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 MRPL9Q9BYD2 267 aaKnown RBP16.61■□□□□ 0.25
VPS39-210ENST00000568357 CCDC113Q9H0I3 377 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 C2orf40Q9H1Z8 148 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 ZSCAN16Q9H4T2 348 aaPredicted RBP16.61■□□□□ 0.25
VPS39-210ENST00000568357 PCDHGC5Q9Y5F6 944 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 WDFY4Q6ZS81 3184 aa16.61■□□□□ 0.25
VPS39-210ENST00000568357 SFI1A8K8P3 1242 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 B4GALT3O60512 393 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 EDN1P05305 212 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 SSBP05455 408 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS39-210ENST00000568357 PLA2G4BP0C869 781 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 IL9P15248 144 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 LIG1P18858 919 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 GTF2F1P35269 517 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS39-210ENST00000568357 SLC12A3P55017 1021 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 ERVFC1P60507 584 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 PLCB3Q01970 1234 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 RAD51AP2Q09MP3 1159 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 PPP2R5AQ15172 486 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 CSPP1Q1MSJ5 1256 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 SPECC1Q5M775 1068 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 USP49Q70CQ1 688 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 ZNF280BQ86YH2 543 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 FAM178BQ8IXR5 827 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 SPRYD3Q8NCJ5 442 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 CNNM3Q8NE01 707 aa16.6■□□□□ 0.25
VPS39-210ENST00000568357 CDK5RAP3Q96JB5 506 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms