RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DNAJB4Q9UDY4 337 aa17.93■□□□□ 0.46
CLN3-229ENST00000567963 TECTAO75443 2155 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 WNT7AO00755 349 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 CTSAP10619 480 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 CA8P35219 290 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 AFF1P51825 1210 aaKnown RBP17.92■□□□□ 0.46
CLN3-229ENST00000567963 ZXDAP98168 799 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 TRIM29Q14134 588 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 GIT2Q14161 759 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 MXD4Q14582 209 aaPredicted RBP17.92■□□□□ 0.46
CLN3-229ENST00000567963 PCBP1Q15365 356 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLN3-229ENST00000567963 TPRNQ4KMQ1 711 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 BCL7CQ8WUZ0 217 aaPredicted RBP17.92■□□□□ 0.46
CLN3-229ENST00000567963 MFSD14AQ96MC6 490 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 MTMR9Q96QG7 549 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 GBP3Q9H0R5 595 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 RSAD1Q9HA92 442 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 KANSL3Q9P2N6 904 aa17.92■□□□□ 0.46
CLN3-229ENST00000567963 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.91■□□□□ 0.46
CLN3-229ENST00000567963 B4GALT3O60512 393 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 NEMFO60524 1076 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 DDHD2O94830 711 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 CENPBP07199 599 aaPredicted RBP17.91■□□□□ 0.46
CLN3-229ENST00000567963 NCLP19338 710 aaKnown RBP17.91■□□□□ 0.46
CLN3-229ENST00000567963 TXKP42681 527 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 SLC11A1P49279 550 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 FOSBP53539 338 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 PTENP60484 403 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 ITIH3Q06033 890 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 POU5F1BQ06416 359 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 TRIM67Q6ZTA4 783 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 BMP8AQ7Z5Y6 402 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 URGCPQ8TCY9 931 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 AUTS2Q8WXX7 1259 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 KCNH6Q9H252 994 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 ADAM7Q9H2U9 754 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 ANKEF1Q9NU02 776 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 CNTNAP2Q9UHC6 1331 aa17.91■□□□□ 0.46
CLN3-229ENST00000567963 DGAT1O75907 488 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 ERLIN2O94905 339 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 SEC24BO95487 1268 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 AXLP30530 894 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 ST3GAL1Q11201 340 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 CES5AQ6NT32 575 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 SMG8Q8ND04 991 aaKnown RBP17.9■□□□□ 0.46
CLN3-229ENST00000567963 CNNM3Q8NE01 707 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 CDH22Q9UJ99 828 aa17.9■□□□□ 0.46
CLN3-229ENST00000567963 TSPAN1O60635 241 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 ALDH2P05091 517 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 ARL2P36404 184 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 RARRES1P49788 294 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 TFDP1Q14186 410 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 IFNLR1Q8IU57 520 aaPredicted RBP17.89■□□□□ 0.45
CLN3-229ENST00000567963 TMEM87AQ8NBN3 555 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 FAM193BQ96PV7 902 aaPredicted RBP17.89■□□□□ 0.45
CLN3-229ENST00000567963 VN1R3Q9BXE9 311 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 UBN1Q9NPG3 1134 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 STK39Q9UEW8 545 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 MUC6Q6W4X9 2439 aa17.89■□□□□ 0.45
CLN3-229ENST00000567963 TMEM221A6NGB7 291 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 INO80B-WBP1J3KQ70 363 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 M0R296 226 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 POMCP01189 267 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 XRCC6P12956 609 aaKnown RBP eCLIP17.88■□□□□ 0.45
CLN3-229ENST00000567963 NCBP1Q09161 790 aaKnown RBP17.88■□□□□ 0.45
CLN3-229ENST00000567963 NOTUMQ6P988 496 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 ASAP3Q8TDY4 903 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 PIGOQ8TEQ8 1089 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 PBXIP1Q96AQ6 731 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 CPB2Q96IY4 423 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 FBXL18Q96ME1 805 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 NECTIN4Q96NY8 510 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 TMEM175Q9BSA9 504 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 EIF2AQ9BY44 585 aaKnown RBP17.88■□□□□ 0.45
CLN3-229ENST00000567963 TMEM60Q9H2L4 133 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 FAN1Q9Y2M0 1017 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 IPPQ9Y573 584 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 A0A087WWV3 80 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 POTEMA6NI47 508 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 NRP1O14786 923 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 ITGA4P13612 1032 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 EPCAMP16422 314 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 SP100P23497 879 aaPredicted RBP17.88■□□□□ 0.45
CLN3-229ENST00000567963 MBTD1Q05BQ5 628 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 CAPSQ13938 189 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 PTPN14Q15678 1187 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 SLC22A17Q8WUG5 538 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 CCDC51Q96ER9 411 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 NFKBIZQ9BYH8 718 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 CSRNP2Q9H175 543 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 RNF39Q9H2S5 420 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 POMKQ9H5K3 350 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 NR2E1Q9Y466 385 aa17.88■□□□□ 0.45
CLN3-229ENST00000567963 ZNF318Q5VUA4 2279 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 INPPL1O15357 1258 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 SPATA31C1P0DKV0 1188 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 GLRA2P23416 452 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 MCM7P33993 719 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 SIGLEC14Q08ET2 396 aa17.87■□□□□ 0.45
CLN3-229ENST00000567963 AMHR2Q16671 573 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms