RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 TTC38Q5R3I4 469 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 KCNT2Q6UVM3 1135 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 LRRC55Q6ZSA7 311 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 EP400NLQ6ZTU2 488 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 FERMT3Q86UX7 667 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 THNSL1Q8IYQ7 743 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 RNF149Q8NC42 400 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 RNF169Q8NCN4 708 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 ERMNQ8TAM6 284 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 HELQQ8TDG4 1101 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 MRPS27Q92552 414 aaKnown RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 TMEM143Q96AN5 459 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 PGBD4Q96DM1 585 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 ZNF558Q96NG5 402 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 CDCA3Q99618 268 aaPredicted RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 POLR3CQ9BUI4 534 aaPredicted RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 NFKBIZQ9BYH8 718 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 TMEM60Q9H2L4 133 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 TUFT1Q9NNX1 390 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 FAM105AQ9NUU6 356 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 HCSTQ9UBK5 93 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 PUF60Q9UHX1 559 aaKnown RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 NOL7Q9UMY1 257 aaKnown RBP5.33□□□□□ -1.56
CLK3-219ENST00000567805 KIF3AQ9Y496 699 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 WDFY4Q6ZS81 3184 aa5.33□□□□□ -1.56
CLK3-219ENST00000567805 TTC28Q96AY4 2481 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 NCOR1O75376 2440 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 FSCN2O14926 492 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 LINC01565O15544 149 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 TBX10O75333 385 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 ERLIN2O94905 339 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 OR52Z1P0C646 297 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 SPATA31C1P0DKV0 1188 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 IL9P15248 144 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 MUTP22033 750 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 U2AF2P26368 475 aaKnown RBP eCLIP5.32□□□□□ -1.56
CLK3-219ENST00000567805 RPA1P27694 616 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 GTF2F1P35269 517 aaKnown RBP eCLIP5.32□□□□□ -1.56
CLK3-219ENST00000567805 IRS1P35568 1242 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 ARL2P36404 184 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 TECP42680 631 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 NRIP1P48552 1158 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 ALDH7A1P49419 539 aaKnown RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 MCM2P49736 904 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 NDUFV1P49821 464 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 BCAR1P56945 870 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 PTENP60484 403 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 ERVFC1P60507 584 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 DLX2Q07687 328 aaPredicted RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 NCBP1Q09161 790 aaKnown RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 SMAD4Q13485 552 aaKnown RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 ZNF174Q15697 407 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 SMAD2Q15796 467 aaKnown RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 NOMO2Q5JPE7 1267 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 HAUS3Q68CZ6 603 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 NOTUMQ6P988 496 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 GLB1LQ6UWU2 654 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 ADGRD2Q7Z7M1 963 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 CATSPER3Q86XQ3 398 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 FAM178BQ8IXR5 827 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 EFHBQ8N7U6 833 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 CNNM3Q8NE01 707 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 MCPH1Q8NEM0 835 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 URGCPQ8TCY9 931 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 MICAL1Q8TDZ2 1067 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 PIGOQ8TEQ8 1089 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 CCDC51Q96ER9 411 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 NACC1Q96RE7 527 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 TCF25Q9BQ70 676 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 IGFLR1Q9H665 355 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 TLE6Q9H808 572 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 MINDY3Q9H8M7 445 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 NGRNQ9NPE2 291 aaKnown RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 UBN1Q9NPG3 1134 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 XPNPEP1Q9NQW7 623 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 ENTPD7Q9NQZ7 604 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 SPG21Q9NZD8 308 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 PRKAG3Q9UGI9 489 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 CD207Q9UJ71 328 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 DBR1Q9UK59 544 aaKnown RBP5.32□□□□□ -1.56
CLK3-219ENST00000567805 PCDHB2Q9Y5E7 798 aa5.32□□□□□ -1.56
CLK3-219ENST00000567805 TRIP11Q15643 1979 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 CNTNAP2Q9UHC6 1331 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 MEIS3P2A8K0S8 358 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 INO80B-WBP1J3KQ70 363 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 LAD1O00515 517 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 MBTPS2O43462 519 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 TSPAN1O60635 241 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 USO1O60763 962 aaKnown RBP5.31□□□□□ -1.56
CLK3-219ENST00000567805 ZC3H11AO75152 810 aaKnown RBP eCLIP5.31□□□□□ -1.56
CLK3-219ENST00000567805 MED24O75448 989 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 OFD1O75665 1012 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 EYA4O95677 639 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 GLP2RO95838 553 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 SRGAP2BP0DMP2 458 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 NCLP19338 710 aaKnown RBP5.31□□□□□ -1.56
CLK3-219ENST00000567805 GLRA2P23416 452 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 HOXA11P31270 313 aaPredicted RBP5.31□□□□□ -1.56
CLK3-219ENST00000567805 PBX3P40426 434 aa5.31□□□□□ -1.56
CLK3-219ENST00000567805 TOB1P50616 345 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms