RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TBC1D17Q9HA65 648 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 TFIP11Q9UBB9 837 aaKnown RBP12.67□□□□□ -0.38
CLN3-226ENST00000567160 SIT1Q9Y3P8 196 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 NOC2LQ9Y3T9 749 aaKnown RBP12.67□□□□□ -0.38
CLN3-226ENST00000567160 PCDHB6Q9Y5E3 794 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 ATRXP46100 2492 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 CACNA1IQ9P0X4 2223 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 KRBA1A5PL33 1030 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 SPTLC1O15269 473 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 SLC37A4O43826 429 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 ATP9AO75110 1047 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 ARP10275 920 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 NCLP19338 710 aaKnown RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 TRAPPC10P48553 1259 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 ALDH7A1P49419 539 aaKnown RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 DNM1Q05193 864 aaKnown RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 MTMR1Q13613 665 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 PLCB4Q15147 1175 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 PRR16Q569H4 304 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 PHLDB3Q6NSJ2 640 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 MTHFD1LQ6UB35 978 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 LRRC55Q6ZSA7 311 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 GPR149Q86SP6 731 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 PLA2G4DQ86XP0 818 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 SLC39A11Q8N1S5 342 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 ZNF396Q96N95 335 aaPredicted RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 NAP1L4Q99733 375 aaKnown RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 MXRA8Q9BRK3 442 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 JPH1Q9HDC5 661 aaPredicted RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 DDX25Q9UHL0 483 aaKnown RBP12.66□□□□□ -0.38
CLN3-226ENST00000567160 CA14Q9ULX7 337 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 ATP6V1DQ9Y5K8 247 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 UBIAD1Q9Y5Z9 338 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 USP24Q9UPU5 2620 aa12.66□□□□□ -0.38
CLN3-226ENST00000567160 GPR179Q6PRD1 2367 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 MYH9P35579 1960 aaKnown RBP12.65□□□□□ -0.38
CLN3-226ENST00000567160 C2orf16Q68DN1 1984 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 FAM86B1E9PN63 330 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 MAFGO15525 162 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 NARSO43776 548 aaKnown RBP12.65□□□□□ -0.38
CLN3-226ENST00000567160 DCNP07585 359 aaKnown RBP12.65□□□□□ -0.38
CLN3-226ENST00000567160 ADRB1P08588 477 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 FAM86B2P0C5J1 330 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 SRFP11831 508 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 GCFC2P16383 781 aaKnown RBP12.65□□□□□ -0.38
CLN3-226ENST00000567160 EPCAMP16422 314 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 ITGB5P18084 799 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 CIITAP33076 1130 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 SLC26A2P50443 739 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 CEP55Q53EZ4 464 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 KANK3Q6NY19 840 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 C15orf39Q6ZRI6 1047 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 PLPPR4Q7Z2D5 763 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 POTEDQ86YR6 584 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 TRAPPC12Q8WVT3 735 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 NXPE3Q969Y0 559 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 USP28Q96RU2 1077 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 MRPL9Q9BYD2 267 aaKnown RBP12.65□□□□□ -0.38
CLN3-226ENST00000567160 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.65□□□□□ -0.38
CLN3-226ENST00000567160 PKD2L1Q9P0L9 805 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 IRAK3Q9Y616 596 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 CLIC4Q9Y696 253 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 EVPLQ92817 2033 aa12.65□□□□□ -0.38
CLN3-226ENST00000567160 FAM208BQ5VWN6 2430 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 IGLV3-22A0A075B6J6 115 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 CYP3A7-CYP3A51PA0A087WV96 503 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 MEIS1O00470 390 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 MARCH6O60337 910 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 NEMFO60524 1076 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 ZSCAN20P17040 1043 aaPredicted RBP12.64□□□□□ -0.39
CLN3-226ENST00000567160 CYP3A7P24462 503 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 KLRC1P26715 233 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 STAT5BP51692 787 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 CRYBB1P53674 252 aaPredicted RBP12.64□□□□□ -0.39
CLN3-226ENST00000567160 POLGP54098 1239 aaPredicted RBP12.64□□□□□ -0.39
CLN3-226ENST00000567160 SF3A1Q15459 793 aaKnown RBP12.64□□□□□ -0.39
CLN3-226ENST00000567160 ZNF528Q3MIS6 628 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 PPP4R3AQ6IN85 833 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 MOXD1Q6UVY6 613 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 VPS52Q8N1B4 723 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 SLC22A17Q8WUG5 538 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 TMEM40Q8WWA1 233 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 STAMQ92783 540 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 MBOAT7Q96N66 472 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 ZBP1Q9H171 429 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 TMEM60Q9H2L4 133 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 JADE2Q9NQC1 790 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 SLC9A2Q9UBY0 812 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 MIA3Q5JRA6 1907 aa12.64□□□□□ -0.39
CLN3-226ENST00000567160 CTSAP10619 480 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 GBP2P32456 591 aaPredicted RBP12.63□□□□□ -0.39
CLN3-226ENST00000567160 KRT85P78386 507 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 SETQ01105 290 aaPredicted RBP12.63□□□□□ -0.39
CLN3-226ENST00000567160 PTGDRQ13258 359 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 STK38Q15208 465 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 CALCRLQ16602 461 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 Q4G0T1 1027 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 ELMSAN1Q6PJG2 1045 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 NIPA1Q7RTP0 329 aa12.63□□□□□ -0.39
CLN3-226ENST00000567160 FAM228AQ86W67 206 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms