RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CNNM3Q8NE01 707 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 NSUN7Q8NE18 718 aaKnown RBP20.88■□□□□ 0.93
CLN3-218ENST00000565688 NECTIN4Q96NY8 510 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 EIF2AK1Q9BQI3 630 aaKnown RBP20.88■□□□□ 0.93
CLN3-218ENST00000565688 MINDY3Q9H8M7 445 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.87■□□□□ 0.93
CLN3-218ENST00000565688 ERLIN2O94905 339 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 CTSAP10619 480 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 NEK4P51957 841 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 NCBP1Q09161 790 aaKnown RBP20.87■□□□□ 0.93
CLN3-218ENST00000565688 AGMOQ6ZNB7 445 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 TMEM173Q86WV6 379 aaPredicted RBP20.87■□□□□ 0.93
CLN3-218ENST00000565688 HSD17B14Q9BPX1 270 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 APOL5Q9BWW9 433 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 ADAM7Q9H2U9 754 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 RSAD1Q9HA92 442 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 UBN1Q9NPG3 1134 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 BMP2KQ9NSY1 1161 aaPredicted RBP20.87■□□□□ 0.93
CLN3-218ENST00000565688 ANKEF1Q9NU02 776 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 DZANK1Q9NVP4 752 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 NR2E1Q9Y466 385 aa20.87■□□□□ 0.93
CLN3-218ENST00000565688 TMEM221A6NGB7 291 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 BTBD18B2RXH4 712 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 M0R296 226 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 ZBTB39O15060 712 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 NEMFO60524 1076 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 LARGE1O95461 756 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 AXLP30530 894 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 POU5F1BQ06416 359 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 TFDP1Q14186 410 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 DIS3L2Q8IYB7 885 aaKnown RBP20.86■□□□□ 0.93
CLN3-218ENST00000565688 CCDC51Q96ER9 411 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 GBP3Q9H0R5 595 aa20.86■□□□□ 0.93
CLN3-218ENST00000565688 TTC12Q9H892 705 aaPredicted RBP20.86■□□□□ 0.93
CLN3-218ENST00000565688 WDFY4Q6ZS81 3184 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 TECTAO75443 2155 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 DGAT1O75907 488 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 NCLP19338 710 aaKnown RBP20.85■□□□□ 0.93
CLN3-218ENST00000565688 SLC11A1P49279 550 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 PTENP60484 403 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 UBXN11Q5T124 520 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 NOTUMQ6P988 496 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 RIPOR3Q96MK2 946 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 CCDC43Q96MW1 224 aaKnown RBP20.85■□□□□ 0.93
CLN3-218ENST00000565688 FAM193BQ96PV7 902 aaPredicted RBP20.85■□□□□ 0.93
CLN3-218ENST00000565688 TMEM175Q9BSA9 504 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 DNAJB4Q9UDY4 337 aa20.85■□□□□ 0.93
CLN3-218ENST00000565688 ARID2Q68CP9 1835 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 ALDH2P05091 517 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 MTHFRP42898 656 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 PPFIBP1Q86W92 1011 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 ZNF280BQ86YH2 543 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 IFNLR1Q8IU57 520 aaPredicted RBP20.84■□□□□ 0.93
CLN3-218ENST00000565688 BCL7CQ8WUZ0 217 aaPredicted RBP20.84■□□□□ 0.93
CLN3-218ENST00000565688 PBXIP1Q96AQ6 731 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 XPNPEP1Q9NQW7 623 aa20.84■□□□□ 0.93
CLN3-218ENST00000565688 ZNF318Q5VUA4 2279 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 TSPAN1O60635 241 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 JAK2O60674 1132 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 XRCC6P12956 609 aaKnown RBP eCLIP20.83■□□□□ 0.93
CLN3-218ENST00000565688 ITGA4P13612 1032 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 TXKP42681 527 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 SIGLEC14Q08ET2 396 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 SAFBQ15424 915 aaKnown RBP eCLIP20.83■□□□□ 0.93
CLN3-218ENST00000565688 PTPN21Q16825 1174 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 AUTS2Q8WXX7 1259 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 FBXL18Q96ME1 805 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 MTMR9Q96QG7 549 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 EMILIN2Q9BXX0 1053 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 NFKBIZQ9BYH8 718 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 FAN1Q9Y2M0 1017 aa20.83■□□□□ 0.93
CLN3-218ENST00000565688 INO80B-WBP1J3KQ70 363 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 B4GALT3O60512 393 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 DDHD2O94830 711 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 ARL2P36404 184 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 RARRES1P49788 294 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 PTPN14Q15678 1187 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 SUGP1Q8IWZ8 645 aaKnown RBP20.82■□□□□ 0.92
CLN3-218ENST00000565688 SMG8Q8ND04 991 aaKnown RBP20.82■□□□□ 0.92
CLN3-218ENST00000565688 SLC22A17Q8WUG5 538 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 VN1R3Q9BXE9 311 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 TSHZ2Q9NRE2 1034 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 IPPQ9Y573 584 aa20.82■□□□□ 0.92
CLN3-218ENST00000565688 INPPL1O15357 1258 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 POMCP01189 267 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 AFF1P51825 1210 aaKnown RBP20.81■□□□□ 0.92
CLN3-218ENST00000565688 ATAT1Q5SQI0 421 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 RARS2Q5T160 578 aaKnown RBP20.81■□□□□ 0.92
CLN3-218ENST00000565688 ZBTB33Q86T24 672 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 HACE1Q8IYU2 909 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 CSRNP2Q9H175 543 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 POMKQ9H5K3 350 aa20.81■□□□□ 0.92
CLN3-218ENST00000565688 NRP1O14786 923 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 EPCAMP16422 314 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 SP100P23497 879 aaPredicted RBP20.8■□□□□ 0.92
CLN3-218ENST00000565688 FOSBP53539 338 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 MBTD1Q05BQ5 628 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 CAPSQ13938 189 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 KIAA1841Q6NSI8 718 aa20.8■□□□□ 0.92
CLN3-218ENST00000565688 CABP7Q86V35 215 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms