RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NDUFAF2Q8N183 169 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 SYAP1Q96A49 352 aaPredicted RBP5.93□□□□□ -1.46
VPS35-205ENST00000563984 AGAP3Q96P47 875 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 ORAI3Q9BRQ5 295 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 MEGF9Q9H1U4 602 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 MED4Q9NPJ6 270 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 B4GALT6Q9UBX8 382 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 Q9UFV3 132 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 IL16Q14005 1332 aa5.93□□□□□ -1.46
VPS35-205ENST00000563984 H7C1D1 291 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 NPHP1O15259 732 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 KRT37O76014 449 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 HMGCRP04035 888 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 CYP17A1P05093 508 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 ADCY8P40145 1251 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 SARNPP82979 210 aaKnown RBP5.92□□□□□ -1.46
VPS35-205ENST00000563984 CD83Q01151 205 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 ALDH6A1Q02252 535 aaKnown RBP5.92□□□□□ -1.46
VPS35-205ENST00000563984 MOGSQ13724 837 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 ZNF174Q15697 407 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 LRCH2Q5VUJ6 765 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 GRAMD4Q6IC98 578 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 OTOP2Q7RTS6 562 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 SPRED1Q7Z699 444 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 RTN4RL1Q86UN2 441 aaPredicted RBP5.92□□□□□ -1.46
VPS35-205ENST00000563984 PALM2Q8IXS6 379 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 DNERQ8NFT8 737 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 SMCR8Q8TEV9 937 aaPredicted RBP5.92□□□□□ -1.46
VPS35-205ENST00000563984 MPP4Q96JB8 637 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 TTC14Q96N46 770 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 LMF1Q96S06 567 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 IWS1Q96ST2 819 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 CEP89Q96ST8 783 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 FOXB1Q99853 325 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 PCIF1Q9H4Z3 704 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 FANCLQ9NW38 375 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 TMCC3Q9ULS5 477 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 THRAP3Q9Y2W1 955 aaKnown RBP5.92□□□□□ -1.46
VPS35-205ENST00000563984 IKBKGQ9Y6K9 419 aa5.92□□□□□ -1.46
VPS35-205ENST00000563984 PATE3B3GLJ2 98 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 CBX4O00257 560 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 U2AF1L5P0DN76 240 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 RPL17P18621 184 aaKnown RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 APEX1P27695 318 aaKnown RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 MAGEA8P43361 318 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 KCNQ1P51787 676 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 ZNF131P52739 623 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 ZNF132P52740 706 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 U2AF1Q01081 240 aaKnown RBP eCLIP5.91□□□□□ -1.46
VPS35-205ENST00000563984 MAP3K12Q12852 859 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 TRDNQ13061 729 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 ALDH1L2Q3SY69 923 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 AMOTQ4VCS5 1084 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 TRIM68Q6AZZ1 485 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 ZNF585AQ6P3V2 769 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 ARHGEF25Q86VW2 580 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 NME9Q86XW9 330 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 KIF18BQ86Y91 864 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 CCDC89Q8N998 374 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 SH3RF3Q8TEJ3 882 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 DVL3Q92997 716 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 FOXRED1Q96CU9 486 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 NEIL1Q96FI4 390 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 CCDC34Q96HJ3 373 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 ZNF396Q96N95 335 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 TEX13AQ9BXU3 409 aaPredicted RBP5.91□□□□□ -1.46
VPS35-205ENST00000563984 PCED1AQ9H1Q7 454 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 MSL2Q9HCI7 577 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 PCDH12Q9NPG4 1184 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 PTPN22Q9Y2R2 807 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 CD2APQ9Y5K6 639 aa5.91□□□□□ -1.46
VPS35-205ENST00000563984 DVL2O14641 736 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 LDHAP00338 332 aaKnown RBP5.9□□□□□ -1.46
VPS35-205ENST00000563984 FOSP01100 380 aaPredicted RBP5.9□□□□□ -1.46
VPS35-205ENST00000563984 POU3F2P20265 443 aaPredicted RBP5.9□□□□□ -1.46
VPS35-205ENST00000563984 MEOX1P50221 254 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 RRADP55042 308 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 RAC3P60763 192 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 NFYCQ13952 458 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 TRIM29Q14134 588 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 FILIP1LQ4L180 1135 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 TAX1BP1Q86VP1 789 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 TTC30AQ86WT1 665 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 MYO1HQ8N1T3 1032 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 KIAA1958Q8N8K9 716 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 MIGA1Q8NAN2 632 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 NGDNQ8NEJ9 315 aaKnown RBP5.9□□□□□ -1.46
VPS35-205ENST00000563984 JDP2Q8WYK2 163 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 NINJ1Q92982 152 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 TEKT1Q969V4 418 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 CHMP4CQ96CF2 233 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 LZTS2Q9BRK4 669 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 ALDH8A1Q9H2A2 487 aaPredicted RBP5.9□□□□□ -1.46
VPS35-205ENST00000563984 CD248Q9HCU0 757 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 DDX56Q9NY93 547 aaKnown RBP5.9□□□□□ -1.46
VPS35-205ENST00000563984 CDC42EP3Q9UKI2 254 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 ZKSCAN5Q9Y2L8 839 aa5.9□□□□□ -1.46
VPS35-205ENST00000563984 CCDC196A0A1B0GTZ2 297 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 ANKRD18BA2A2Z9 1011 aa5.89□□□□□ -1.47
VPS35-205ENST00000563984 DYTNA2CJ06 578 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms