RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 LIMCH1Q9UPQ0 1083 aa19.19■□□□□ 0.66
VPS9D1-203ENST00000563798 ARID2Q68CP9 1835 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 NT5C1B-RDH14C9J2C7 533 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 INPPL1O15357 1258 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 ZC3H11AO75152 810 aaKnown RBP eCLIP19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 NCLP19338 710 aaKnown RBP19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 ARL2P36404 184 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 TECP42680 631 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 TXKP42681 527 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 GIT2Q14161 759 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 TMEM173Q86WV6 379 aaPredicted RBP19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 EDAQ92838 391 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 HCFC2Q9Y5Z7 792 aa19.18■□□□□ 0.66
VPS9D1-203ENST00000563798 CLASP2O75122 1294 aaKnown RBP19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 CTSAP10619 480 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 RARRES1P49788 294 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 ORC2Q13416 577 aaPredicted RBP19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 TFDP1Q14186 410 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 VPS52Q8N1B4 723 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 BCL7CQ8WUZ0 217 aaPredicted RBP19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 TMEM175Q9BSA9 504 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 RSAD1Q9HA92 442 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 UBN1Q9NPG3 1134 aa19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 BMP2KQ9NSY1 1161 aaPredicted RBP19.17■□□□□ 0.66
VPS9D1-203ENST00000563798 B4GALT3O60512 393 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 TSPAN1O60635 241 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 CXCL14O95715 111 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 SPATA31C1P0DKV0 1188 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 SLC11A1P49279 550 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 SAFBQ15424 915 aaKnown RBP eCLIP19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 LONRF3Q496Y0 759 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 TPRNQ4KMQ1 711 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 BMP8AQ7Z5Y6 402 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 ZNF280BQ86YH2 543 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 SMG8Q8ND04 991 aaKnown RBP19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 URGCPQ8TCY9 931 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 KCNH6Q9H252 994 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 TMEM60Q9H2L4 133 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 DNAJB4Q9UDY4 337 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 INPP5FQ9Y2H2 1132 aa19.16■□□□□ 0.66
VPS9D1-203ENST00000563798 DDHD2O94830 711 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 ERLIN2O94905 339 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 RNASELQ05823 741 aaKnown RBP19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 MBTD1Q05BQ5 628 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 ITIH3Q06033 890 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 CAPSQ13938 189 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 AMHR2Q16671 573 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 ASAP3Q8TDY4 903 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 VN1R3Q9BXE9 311 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 ADAM7Q9H2U9 754 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 FOXP1Q9H334 677 aaPredicted RBP19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 TUFT1Q9NNX1 390 aa19.15■□□□□ 0.66
VPS9D1-203ENST00000563798 ALDH2P05091 517 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 GLRA2P23416 452 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 AFF1P51825 1210 aaKnown RBP19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 NCBP1Q09161 790 aaKnown RBP19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 LLGL2Q6P1M3 1020 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 NOTUMQ6P988 496 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 CATSPER3Q86XQ3 398 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 SLC22A17Q8WUG5 538 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 ZSCAN31Q96LW9 406 aaPredicted RBP19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 NECTIN4Q96NY8 510 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 POLR3CQ9BUI4 534 aaPredicted RBP19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 CSRNP2Q9H175 543 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 DBR1Q9UK59 544 aaKnown RBP19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 IPPQ9Y573 584 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 TRIOO75962 3097 aa19.14■□□□□ 0.65
VPS9D1-203ENST00000563798 POTEMA6NI47 508 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 ITGA4P13612 1032 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 MCM7P33993 719 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 HMGN5P82970 282 aaKnown RBP19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 ZXDAP98168 799 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 PTPN14Q15678 1187 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 HFE2Q6ZVN8 426 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 CCDC83Q8IWF9 413 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 FBXO18Q8NFZ0 1043 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 PIGOQ8TEQ8 1089 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 C8orf76Q96K31 380 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 RPGRIP1Q96KN7 1286 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 KIF2CQ99661 725 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 EIF2AQ9BY44 585 aaKnown RBP19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 DZANK1Q9NVP4 752 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 ZMYM2Q9UBW7 1377 aa19.13■□□□□ 0.65
VPS9D1-203ENST00000563798 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 INO80B-WBP1J3KQ70 363 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 LILRB3O75022 631 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 EFEMP2O95967 443 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 ARF4P18085 180 aaPredicted RBP19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 MUTP22033 750 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 FOSBP53539 338 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 DSC1Q08554 894 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 CES5AQ6NT32 575 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 TRIM67Q6ZTA4 783 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 PPFIBP1Q86W92 1011 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 MFSD14AQ96MC6 490 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 NACC1Q96RE7 527 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 GBP3Q9H0R5 595 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 RNF39Q9H2S5 420 aa19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 SH2B1Q9NRF2 756 aaPredicted RBP19.12■□□□□ 0.65
VPS9D1-203ENST00000563798 FAN1Q9Y2M0 1017 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms