RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 B4GALT3O60512 393 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 DDHD2O94830 711 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 LARGE1O95461 756 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 NEFLP07196 543 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 CA8P35219 290 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 SLC11A1P49279 550 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 ITIH3Q06033 890 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 EMC2Q15006 297 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 CES5AQ6NT32 575 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 ALYREFQ86V81 257 aaKnown RBP17.57■□□□□ 0.4
CLK3-211ENST00000563297 RNF149Q8NC42 400 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 HSD17B14Q9BPX1 270 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 EIF2AK1Q9BQI3 630 aaKnown RBP17.57■□□□□ 0.4
CLK3-211ENST00000563297 VN1R3Q9BXE9 311 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 GBP3Q9H0R5 595 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 PCDHA12Q9UN75 941 aa17.57■□□□□ 0.4
CLK3-211ENST00000563297 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.56■□□□□ 0.4
CLK3-211ENST00000563297 SP100P23497 879 aaPredicted RBP17.56■□□□□ 0.4
CLK3-211ENST00000563297 NHLH1Q02575 133 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 SIGLEC14Q08ET2 396 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 GIT2Q14161 759 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 SLC22A17Q8WUG5 538 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 GTF3C6Q969F1 213 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 MTRQ99707 1265 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 POMKQ9H5K3 350 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 RSAD1Q9HA92 442 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 BRMS1Q9HCU9 246 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 XPNPEP1Q9NQW7 623 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 KANSL3Q9P2N6 904 aa17.56■□□□□ 0.4
CLK3-211ENST00000563297 CNTNAP2Q9UHC6 1331 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 BTBD18B2RXH4 712 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 WNT7AO00755 349 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 LYPLA2O95372 231 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 ALDH2P05091 517 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 PTENP60484 403 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 MXD4Q14582 209 aaPredicted RBP17.55■□□□□ 0.4
CLK3-211ENST00000563297 PTPN21Q16825 1174 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 KANK3Q6NY19 840 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 C12orf76Q8N812 135 aaPredicted RBP17.55■□□□□ 0.4
CLK3-211ENST00000563297 TMEM87AQ8NBN3 555 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 SMG8Q8ND04 991 aaKnown RBP17.55■□□□□ 0.4
CLK3-211ENST00000563297 NSUN7Q8NE18 718 aaKnown RBP17.55■□□□□ 0.4
CLK3-211ENST00000563297 URGCPQ8TCY9 931 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 NECTIN4Q96NY8 510 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 TTC12Q9H892 705 aaPredicted RBP17.55■□□□□ 0.4
CLK3-211ENST00000563297 PPP4R2Q9NY27 417 aa17.55■□□□□ 0.4
CLK3-211ENST00000563297 ARID2Q68CP9 1835 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 POMCP01189 267 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 WEE2P0C1S8 567 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 EPCAMP16422 314 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 NCLP19338 710 aaKnown RBP17.54■□□□□ 0.4
CLK3-211ENST00000563297 POU5F1BQ06416 359 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 CALCRLQ16602 461 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 RARS2Q5T160 578 aaKnown RBP17.54■□□□□ 0.4
CLK3-211ENST00000563297 IER5LQ5T953 404 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 IFNLR1Q8IU57 520 aaPredicted RBP17.54■□□□□ 0.4
CLK3-211ENST00000563297 CNNM3Q8NE01 707 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 ASIC4Q96FT7 647 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 TMEM175Q9BSA9 504 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 TSHZ2Q9NRE2 1034 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 ANKEF1Q9NU02 776 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 FAN1Q9Y2M0 1017 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 NR2E1Q9Y466 385 aa17.54■□□□□ 0.4
CLK3-211ENST00000563297 C2CD4DB7Z1M9 353 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 NRP1O14786 923 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 JAK2O60674 1132 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 LILRB3O75022 631 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 ERLIN2O94905 339 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 ITGA4P13612 1032 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 AXLP30530 894 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 TXKP42681 527 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 MTHFRP42898 656 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 NEK4P51957 841 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 PCBP1Q15365 356 aaKnown RBP eCLIP17.53■□□□□ 0.4
CLK3-211ENST00000563297 PTPN14Q15678 1187 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 DIS3L2Q8IYB7 885 aaKnown RBP17.53■□□□□ 0.4
CLK3-211ENST00000563297 FBXL6Q8N531 539 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 RIPOR3Q96MK2 946 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 FAM193BQ96PV7 902 aaPredicted RBP17.53■□□□□ 0.4
CLK3-211ENST00000563297 MTMR9Q96QG7 549 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 EIF2AQ9BY44 585 aaKnown RBP17.53■□□□□ 0.4
CLK3-211ENST00000563297 RNF39Q9H2S5 420 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 UBN1Q9NPG3 1134 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 DZANK1Q9NVP4 752 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 IPPQ9Y573 584 aa17.53■□□□□ 0.4
CLK3-211ENST00000563297 A0A087WWV3 80 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 TSPAN1O60635 241 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 DGAT1O75907 488 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 ARL2P36404 184 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 FOSBP53539 338 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 TFDP1Q14186 410 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 ATAT1Q5SQI0 421 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 SUGP1Q8IWZ8 645 aaKnown RBP17.52■□□□□ 0.4
CLK3-211ENST00000563297 FEZF2Q8TBJ5 459 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 ASAP3Q8TDY4 903 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 CPB2Q96IY4 423 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 KLHL5Q96PQ7 755 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 MIOSQ9NXC5 875 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 STK39Q9UEW8 545 aa17.52■□□□□ 0.4
CLK3-211ENST00000563297 INO80B-WBP1J3KQ70 363 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms