RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 RTP1P59025 263 aa20.77■□□□□ 0.92
SMPD3-203ENST00000563226 GPAT2Q6NUI2 795 aa20.77■□□□□ 0.92
SMPD3-203ENST00000563226 CREG2Q8IUH2 290 aa20.77■□□□□ 0.92
SMPD3-203ENST00000563226 OSBPL9Q96SU4 736 aa20.77■□□□□ 0.92
SMPD3-203ENST00000563226 RNF216Q9NWF9 866 aaPredicted RBP20.77■□□□□ 0.92
SMPD3-203ENST00000563226 USP20Q9Y2K6 914 aa20.77■□□□□ 0.92
SMPD3-203ENST00000563226 SOCS7O14512 581 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 CAGE1Q8TC20 777 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 CEP89Q96ST8 783 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.76■□□□□ 0.91
SMPD3-203ENST00000563226 OGFRQ9NZT2 677 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 ARHGAP28Q9P2N2 729 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 ZNFX1Q9P2E3 1918 aaKnown RBP20.76■□□□□ 0.91
SMPD3-203ENST00000563226 ARIH2O95376 493 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 FTCDO95954 541 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 CKAP4Q07065 602 aaKnown RBP20.76■□□□□ 0.91
SMPD3-203ENST00000563226 LY6KQ17RY6 165 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 ASAP3Q8TDY4 903 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 CCDC127Q96BQ5 260 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 POP1Q99575 1024 aaKnown RBP20.76■□□□□ 0.91
SMPD3-203ENST00000563226 SYT11Q9BT88 431 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 FAM53CQ9NYF3 392 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 SMARCAL1Q9NZC9 954 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 EHD2Q9NZN4 543 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 RAB21Q9UL25 225 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 HYOU1Q9Y4L1 999 aa20.76■□□□□ 0.91
SMPD3-203ENST00000563226 SIP14410 1827 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 GRID2IPA4D2P6 1211 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 N4BP1O75113 896 aaKnown RBP20.75■□□□□ 0.91
SMPD3-203ENST00000563226 MXI1P50539 228 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 C10orf76Q5T2E6 689 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 SLC30A5Q8TAD4 765 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 U2AF1L4Q8WU68 220 aaKnown RBP20.75■□□□□ 0.91
SMPD3-203ENST00000563226 POMGNT1Q8WZA1 660 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 IFT74Q96LB3 600 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 DHX33Q9H6R0 707 aaKnown RBP20.75■□□□□ 0.91
SMPD3-203ENST00000563226 UBE2TQ9NPD8 197 aaPredicted RBP20.75■□□□□ 0.91
SMPD3-203ENST00000563226 TOPORSQ9NS56 1045 aaPredicted RBP20.75■□□□□ 0.91
SMPD3-203ENST00000563226 PCDHGC5Q9Y5F6 944 aa20.75■□□□□ 0.91
SMPD3-203ENST00000563226 LRRIQ3A6PVS8 624 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 FOXN3O00409 490 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 HNRNPDLO14979 420 aaKnown RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 P4HA2O15460 535 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 GGPS1O95749 300 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 SLC25A27O95847 323 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 PRLRP16471 622 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 ANXA13P27216 316 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 MAP2K1Q02750 393 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 C2orf54Q08AI8 447 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 BMS1Q14692 1282 aaKnown RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 GLYCTKQ8IVS8 523 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 KAT5Q92993 513 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 TAF1DQ9H5J8 278 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 FAM170AA1A519 330 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 MCCD1P59942 119 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 VSNL1P62760 191 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 TUBB4BP68371 445 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 PARD3BQ8TEW8 1205 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 SEMA4DQ92854 862 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 FBXL18Q96ME1 805 aa20.74■□□□□ 0.91
SMPD3-203ENST00000563226 PACSIN2Q9UNF0 486 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-203ENST00000563226 CCDC151A5D8V7 595 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 BTNL10A8MVZ5 291 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 SASH3O75995 380 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 GLRA2P23416 452 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 ARMC9Q7Z3E5 817 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 VPS36Q86VN1 386 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 BICD1Q96G01 975 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 FAM84AQ96KN4 292 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 NIFKQ9BYG3 293 aaKnown RBP20.73■□□□□ 0.91
SMPD3-203ENST00000563226 PORCNQ9H237 461 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 TBC1D8O95759 1140 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 TCP1P17987 556 aaKnown RBP20.73■□□□□ 0.91
SMPD3-203ENST00000563226 TCF7P36402 384 aaPredicted RBP20.73■□□□□ 0.91
SMPD3-203ENST00000563226 DNA2P51530 1060 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 CETN1Q12798 172 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 NEDD9Q14511 834 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 BRD3Q15059 726 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 GOLPH3Q9H4A6 298 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 SCN4AP35499 1836 aa20.73■□□□□ 0.91
SMPD3-203ENST00000563226 DNAJC25-GNG10A0A024R161 153 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 GLTPD2A6NH11 291 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 OSBPP22059 807 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 RFX1P22670 979 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 ARL2P36404 184 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 CYP24A1Q07973 514 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 BRDTQ58F21 947 aaPredicted RBP20.72■□□□□ 0.91
SMPD3-203ENST00000563226 LDLRAD1Q5T700 205 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 WDR78Q5VTH9 848 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 METTL7BQ6UX53 244 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 FASTKD5Q7L8L6 764 aaKnown RBP20.72■□□□□ 0.91
SMPD3-203ENST00000563226 PALB2Q86YC2 1186 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 ELMO3Q96BJ8 720 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 MFSD14AQ96MC6 490 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 MMP19Q99542 508 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 ARFGAP3Q9NP61 516 aa20.72■□□□□ 0.91
SMPD3-203ENST00000563226 TMCO5BA8MYB1 307 aa20.71■□□□□ 0.91
SMPD3-203ENST00000563226 PMM2O15305 246 aa20.71■□□□□ 0.91
SMPD3-203ENST00000563226 H2AFZP0C0S5 128 aa20.71■□□□□ 0.91
SMPD3-203ENST00000563226 POTEJP0CG39 1038 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms