RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 CBWD2Q8IUF1 395 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 ZSWIM2Q8NEG5 633 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 LMO3Q8TAP4 145 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 PLEKHO2Q8TD55 490 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 TMC2Q8TDI7 906 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 MFSD14AQ96MC6 490 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 WDR24Q96S15 920 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 ABHD16BQ9H3Z7 469 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 ERAP1Q9NZ08 941 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 CPA4Q9UI42 421 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 USP20Q9Y2K6 914 aa14.06□□□□□ -0.16
SNX1-211ENST00000560829 PLXNB2O15031 1838 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 MYH11P35749 1972 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 ADRB2P07550 413 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 HOXC6P09630 235 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 HOXD8P13378 290 aaPredicted RBP14.05□□□□□ -0.16
SNX1-211ENST00000560829 RFX1P22670 979 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 ADCYAP1R1P41586 468 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 PRKCIP41743 596 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 VAV2P52735 878 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 PPP3CAQ08209 521 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 MKRN4PQ13434 485 aaPredicted RBP14.05□□□□□ -0.16
SNX1-211ENST00000560829 MXD4Q14582 209 aaPredicted RBP14.05□□□□□ -0.16
SNX1-211ENST00000560829 SPA17Q15506 151 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 TAF1CQ15572 869 aaPredicted RBP14.05□□□□□ -0.16
SNX1-211ENST00000560829 C17orf99Q6UX52 265 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 NPLOC4Q8TAT6 608 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 PARD3BQ8TEW8 1205 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 POMGNT1Q8WZA1 660 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 IRX2Q9BZI1 471 aaPredicted RBP14.05□□□□□ -0.16
SNX1-211ENST00000560829 INTS2Q9H0H0 1204 aaKnown RBP14.05□□□□□ -0.16
SNX1-211ENST00000560829 KIAA1586Q9HCI6 787 aa14.05□□□□□ -0.16
SNX1-211ENST00000560829 LRRIQ4A6NIV6 560 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 K7ERI5 159 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 CTIFO43310 598 aaKnown RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 LGALS2P05162 132 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 CASQ1P31415 396 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 LIG4P49917 911 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 EFNA5P52803 228 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 CETN1Q12798 172 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 DRP2Q13474 957 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 ACVR2BQ13705 512 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 RAPGEF1Q13905 1077 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 HSP90AA2PQ14568 343 aaPredicted RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 ASIC2Q16515 512 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 DUSP28Q4G0W2 176 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 CDCA2Q69YH5 1023 aaPredicted RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 IQCEQ6IPM2 695 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 IRF2BP2Q7Z5L9 587 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 USP37Q86T82 979 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 IFNL1Q8IU54 200 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 GPD1LQ8N335 351 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 EHBP1Q8NDI1 1231 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 PRPF31Q8WWY3 499 aaKnown RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 PSPC1Q8WXF1 523 aaKnown RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 SAAL1Q96ER3 474 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 SPAG5Q96R06 1193 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 DEF6Q9H4E7 631 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 BZW2Q9Y6E2 419 aaKnown RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 TLL2Q9Y6L7 1015 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 GOLGA8IPA6NC78 632 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 GOLGA8JA6NMD2 632 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 KRT86O43790 486 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 AKR1B10O60218 316 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 PPFIA4O75335 1185 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 ABL1P00519 1130 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 ANXA13P27216 316 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 GTF2H1P32780 548 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 MAP2K5Q13163 448 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 EPC2Q52LR7 807 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 ZNF484Q5JVG2 852 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 GJC2Q5T442 439 aaPredicted RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 IQSEC1Q6DN90 963 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 SLFN12LQ6IEE8 588 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 FMNL3Q8IVF7 1028 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 BICD1Q96G01 975 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 STK33Q9BYT3 514 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 APEX2Q9UBZ4 518 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 AJAP1Q9UKB5 411 aaPredicted RBP14.04□□□□□ -0.16
SNX1-211ENST00000560829 TRPC6Q9Y210 931 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 COQ4Q9Y3A0 265 aa14.04□□□□□ -0.16
SNX1-211ENST00000560829 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.03□□□□□ -0.16
SNX1-211ENST00000560829 FAM155AB1AL88 458 aaPredicted RBP14.03□□□□□ -0.16
SNX1-211ENST00000560829 EXTL3O43909 919 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 MXI1P50539 228 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 CYP24A1Q07973 514 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 KLHL30Q0D2K2 578 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 TDRD12Q587J7 1177 aaKnown RBP14.03□□□□□ -0.16
SNX1-211ENST00000560829 ZPBP2Q6X784 338 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 KIAA1328Q86T90 577 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 AFG1LQ8WV93 481 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 USP6NLQ92738 828 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 JAKMIP2Q96AA8 810 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 VTI1AQ96AJ9 217 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 TSGA10Q9BZW7 698 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 TMEM117Q9H0C3 514 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 CCDC113Q9H0I3 377 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 PCDHA13Q9Y5I0 950 aa14.03□□□□□ -0.16
SNX1-211ENST00000560829 TRPM7Q96QT4 1865 aa14.02□□□□□ -0.16
SNX1-211ENST00000560829 RCCD1A6NED2 376 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms