RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 KCNC3Q14003 757 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 MXD4Q14582 209 aaPredicted RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 SMC1AQ14683 1233 aaKnown RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 ANKRD54Q6NXT1 300 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 SYCE2Q6PIF2 218 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 TMEM184AQ6ZMB5 413 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 VPS52Q8N1B4 723 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 BCL7CQ8WUZ0 217 aaPredicted RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 CCDC43Q96MW1 224 aaKnown RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 KIF2CQ99661 725 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 EIF2AQ9BY44 585 aaKnown RBP11.38□□□□□ -0.59
LDLR-214ENST00000560628 S1PR5Q9H228 398 aa11.38□□□□□ -0.59
LDLR-214ENST00000560628 TSPAN1O60635 241 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 USO1O60763 962 aaKnown RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 DGAT1O75907 488 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 POMCP01189 267 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 ALDH2P05091 517 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 SPATA31C1P0DKV0 1188 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 SRGAP2BP0DMP2 458 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 ARL2P36404 184 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 RARRES1P49788 294 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 CAPSQ13938 189 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 TFDP1Q14186 410 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 BMS1Q14692 1282 aaKnown RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 DDX53Q86TM3 631 aaKnown RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 CATSPER3Q86XQ3 398 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 FAM184AQ8NB25 1140 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 TMEM87AQ8NBN3 555 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 SMG8Q8ND04 991 aaKnown RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 URGCPQ8TCY9 931 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 IGSF21Q96ID5 467 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 ZSCAN31Q96LW9 406 aaPredicted RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 FAM193BQ96PV7 902 aaPredicted RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 LLPHQ9BRT6 129 aaKnown RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 APOL6Q9BWW8 343 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 PHF7Q9BWX1 381 aaPredicted RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 POLR3FQ9H1D9 316 aaPredicted RBP11.37□□□□□ -0.59
LDLR-214ENST00000560628 RNF39Q9H2S5 420 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 RSAD1Q9HA92 442 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 GPRC5CQ9NQ84 441 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 CDH22Q9UJ99 828 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 HCN4Q9Y3Q4 1203 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 HES2Q9Y543 173 aa11.37□□□□□ -0.59
LDLR-214ENST00000560628 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 FSD2A1L4K1 749 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 PRR33A8MZF0 331 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 LOC730098B7Z3J9 87 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 MED24O75448 989 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 SSBP05455 408 aaKnown RBP eCLIP11.36□□□□□ -0.59
LDLR-214ENST00000560628 XRCC6P12956 609 aaKnown RBP eCLIP11.36□□□□□ -0.59
LDLR-214ENST00000560628 ITGA4P13612 1032 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 NCLP19338 710 aaKnown RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 GLRA2P23416 452 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 SP100P23497 879 aaPredicted RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 MBTD1Q05BQ5 628 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 NCBP1Q09161 790 aaKnown RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 GNL2Q13823 731 aaKnown RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 C8orf34Q49A92 452 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 KANK3Q6NY19 840 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 CDR2LQ86X02 465 aaPredicted RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 C12orf76Q8N812 135 aaPredicted RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 FBXO18Q8NFZ0 1043 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 SUSD6Q92537 303 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 CASP10Q92851 521 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 FAM122AQ96E09 287 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 GAD1Q99259 594 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 VN1R3Q9BXE9 311 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 FOXP1Q9H334 677 aaPredicted RBP11.36□□□□□ -0.59
LDLR-214ENST00000560628 MIOSQ9NXC5 875 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 FAN1Q9Y2M0 1017 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 IPPQ9Y573 584 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 HCFC2Q9Y5Z7 792 aa11.36□□□□□ -0.59
LDLR-214ENST00000560628 LRRIQ4A6NIV6 560 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 NRP1O14786 923 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 B4GALT5O43286 388 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 WEE2P0C1S8 567 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 OR52Z1P0C646 297 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 CTSAP10619 480 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 HOXB8P17481 243 aaPredicted RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 ARF4P18085 180 aaPredicted RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 AXLP30530 894 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 RBM25P49756 843 aaKnown RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 HMGN5P82970 282 aaKnown RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 POU5F1BQ06416 359 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 NBR1Q14596 966 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 CBX2Q14781 532 aaPredicted RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 AMHR2Q16671 573 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 TPRNQ4KMQ1 711 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 HERC4Q5GLZ8 1057 aaPredicted RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 TTC38Q5R3I4 469 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 NOTUMQ6P988 496 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 POTEGQ6S5H5 508 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 IFNLR1Q8IU57 520 aaPredicted RBP11.35□□□□□ -0.59
LDLR-214ENST00000560628 CNNM3Q8NE01 707 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 RSPH1Q8WYR4 309 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 NACC1Q96RE7 527 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 ZBP1Q9H171 429 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 CSRNP2Q9H175 543 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 POLD4Q9HCU8 107 aa11.35□□□□□ -0.59
LDLR-214ENST00000560628 TUFT1Q9NNX1 390 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms