RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 MBTD1Q05BQ5 628 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 PRPF4BQ13523 1007 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 CAPSQ13938 189 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 IL17AQ16552 155 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 NOMO2Q5JPE7 1267 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 HYIQ5T013 277 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 PDE12Q6L8Q7 609 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 SLC27A1Q6PCB7 646 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 EP400NLQ6ZTU2 488 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 CABP7Q86V35 215 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 KLHL23Q8NBE8 558 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 HELQQ8TDG4 1101 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 ASAP3Q8TDY4 903 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 ZNF396Q96N95 335 aaPredicted RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 ZNF558Q96NG5 402 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 CASD1Q96PB1 797 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 CSRNP2Q9H175 543 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 NSUN3Q9H649 340 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 RSAD1Q9HA92 442 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 RC3H2Q9HBD1 1191 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 ALG13Q9NP73 1137 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 GPRC5CQ9NQ84 441 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 TLR9Q9NR96 1032 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 LARSQ9P2J5 1176 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 CFAP45Q9UL16 551 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 LZTS1Q9Y250 596 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 INPP5FQ9Y2H2 1132 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 RBM19Q9Y4C8 960 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 PCDHB13Q9Y5F0 798 aa4.83□□□□□ -1.64
SNX1-205ENST00000559339 MYH9P35579 1960 aaKnown RBP4.83□□□□□ -1.64
SNX1-205ENST00000559339 PRUNE2Q8WUY3 3088 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 CHD7Q9P2D1 2997 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 VCANP13611 3396 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 PP2D1A8MPX8 630 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 E9PMD0 336 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ACKR2O00590 384 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 N4BP3O15049 544 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 TSPAN1O60635 241 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 HIP1RO75146 1068 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ZC3H11AO75152 810 aaKnown RBP eCLIP4.82□□□□□ -1.64
SNX1-205ENST00000559339 TBCAO75347 108 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 OFD1O75665 1012 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 CSPG5O95196 566 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ALDH2P05091 517 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ITGB1P05556 798 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 KRT18P05783 430 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 PLA2G4BP0C869 781 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 SRGAP2BP0DMP2 458 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ARF4P18085 180 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 LIG1P18858 919 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 NCLP19338 710 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 SCP2P22307 547 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 MARCKSP29966 332 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 HOXA11P31270 313 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 CA8P35219 290 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 DDIT3P35638 169 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 GATMP50440 423 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 PEX3P56589 373 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 BCAR1P56945 870 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 STRN3Q13033 797 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 GIT2Q14161 759 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 BECN1Q14457 450 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 SLC39A14Q15043 492 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 STK38Q15208 465 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ECM1Q16610 540 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 FAM187BQ17R55 369 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 LONRF3Q496Y0 759 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 TJAP1Q5JTD0 557 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 CLLU1OSQ5K130 101 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 RRAGBQ5VZM2 374 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 CDCA2Q69YH5 1023 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 ATL3Q6DD88 541 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 RINT1Q6NUQ1 792 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 KCNT2Q6UVM3 1135 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 TMC7Q7Z402 723 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 SPRED2Q7Z698 418 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ZNF598Q86UK7 904 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 SYT2Q8N9I0 419 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 KRI1Q8N9T8 703 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 COLGALT1Q8NBJ5 622 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 POF1BQ8WVV4 589 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 RNF25Q96BH1 459 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 TMEM169Q96HH4 297 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 CPB2Q96IY4 423 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ASB2Q96Q27 587 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 RPS6KC1Q96S38 1066 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 PLIN2Q99541 437 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 CDCA3Q99618 268 aaPredicted RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 TCF25Q9BQ70 676 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 TCHPQ9BT92 498 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 MMTAG2Q9BU76 263 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 CCSER1Q9C0I3 900 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 FZD8Q9H461 694 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ZHX3Q9H4I2 956 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 MINDY3Q9H8M7 445 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 NGRNQ9NPE2 291 aaKnown RBP4.82□□□□□ -1.64
SNX1-205ENST00000559339 KMT5AQ9NQR1 393 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 ENTPD7Q9NQZ7 604 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 SPG21Q9NZD8 308 aa4.82□□□□□ -1.64
SNX1-205ENST00000559339 PARP2Q9UGN5 583 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms