RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ESPNLQ6ZVH7 1005 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 FAM83AQ86UY5 434 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 KIF18BQ86Y91 864 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 EFHBQ8N7U6 833 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 CDYL2Q8N8U2 506 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 GLB1L3Q8NCI6 653 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-208ENST00000559119 PIK3C3Q8NEB9 887 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 ORAI3Q9BRQ5 295 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 ZSWIM4Q9H7M6 989 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 KANSL2Q9H9L4 492 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 TMEM260Q9NX78 707 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 HDAC5Q9UQL6 1122 aa6.73□□□□□ -1.33
VPS13C-208ENST00000559119 KPNA6O60684 536 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 DNAJC6O75061 913 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 F2P00734 622 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 XPAP23025 273 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-208ENST00000559119 CD69Q07108 199 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 LRRC32Q14392 662 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 NXPE1Q8N323 547 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 SYNPOQ8N3V7 929 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 PPP1R14CQ8TAE6 165 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 PDCD2LQ9BRP1 358 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 KRTAP9-8Q9BYQ0 159 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 ENKD1Q9H0I2 346 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 USP36Q9P275 1121 aaKnown RBP6.72□□□□□ -1.33
VPS13C-208ENST00000559119 PACSIN3Q9UKS6 424 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 USP18Q9UMW8 372 aa6.72□□□□□ -1.33
VPS13C-208ENST00000559119 ELL2O00472 640 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-208ENST00000559119 PROZP22891 400 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 CASRP41180 1078 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 WNT3AP56704 352 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 PLEKHG4Q58EX7 1191 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 METTL24Q5JXM2 366 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 CXorf67Q86X51 503 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-208ENST00000559119 CHTF18Q8WVB6 975 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 SREK1Q8WXA9 508 aaKnown RBP6.71□□□□□ -1.34
VPS13C-208ENST00000559119 IL17RAQ96F46 866 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 THG1LQ9NWX6 298 aaKnown RBP6.71□□□□□ -1.34
VPS13C-208ENST00000559119 MSRAQ9UJ68 235 aa6.71□□□□□ -1.34
VPS13C-208ENST00000559119 NRP2O60462 931 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 LY86O95711 162 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 NUDT3O95989 172 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 CFBP00751 764 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 LAG3P18627 525 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 KPNA1P52294 538 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-208ENST00000559119 DUSP2Q05923 314 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 MRPL49Q13405 166 aaKnown RBP6.7□□□□□ -1.34
VPS13C-208ENST00000559119 VPS72Q15906 364 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 GPR150Q8NGU9 434 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 KCNH6Q9H252 994 aa6.7□□□□□ -1.34
VPS13C-208ENST00000559119 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS13C-208ENST00000559119 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS13C-208ENST00000559119 ZNF891A8MT65 544 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-208ENST00000559119 B3GALT2O43825 422 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 LMNAP02545 664 aaKnown RBP6.69□□□□□ -1.34
VPS13C-208ENST00000559119 ADRA1BP35368 520 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 NRG3P56975 720 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 DSG1Q02413 1049 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 TCEA2Q15560 299 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 IQSEC1Q6DN90 963 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 LMBR1LQ6UX01 489 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 OR52N2Q8NGI0 321 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 GAB3Q8WWW8 586 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 CYP4F11Q9HBI6 524 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 HS3ST4Q9Y661 456 aa6.69□□□□□ -1.34
VPS13C-208ENST00000559119 PFKMP08237 780 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 GZMKP49863 264 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 SART3Q15020 963 aaKnown RBP6.68□□□□□ -1.34
VPS13C-208ENST00000559119 ZBTB41Q5SVQ8 909 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 CNNM4Q6P4Q7 775 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 DOK3Q7L591 496 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 TAS1R1Q7RTX1 841 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 ZNF496Q96IT1 587 aaPredicted RBP6.68□□□□□ -1.34
VPS13C-208ENST00000559119 NDC1Q9BTX1 674 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 SLC46A2Q9BY10 475 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 CPEB1Q9BZB8 566 aaKnown RBP6.68□□□□□ -1.34
VPS13C-208ENST00000559119 ZNF768Q9H5H4 540 aaKnown RBP6.68□□□□□ -1.34
VPS13C-208ENST00000559119 RIOX1Q9H6W3 641 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 ZNHIT2Q9UHR6 403 aa6.68□□□□□ -1.34
VPS13C-208ENST00000559119 PRR5-ARHGAP8B1AHC4 643 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 SEC24DO94855 1032 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-208ENST00000559119 HSP90B1P14625 803 aaKnown RBP6.67□□□□□ -1.34
VPS13C-208ENST00000559119 GPR15P49685 360 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 MGAT5Q09328 741 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 C21orf62-AS1Q17RA5 79 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 CCDC178Q5BJE1 867 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 GPR158Q5T848 1215 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 LRRTM3Q86VH5 581 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 MYEOVQ96EZ4 313 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 DCLRE1CQ96SD1 692 aaKnown RBP6.67□□□□□ -1.34
VPS13C-208ENST00000559119 LSM14BQ9BX40 385 aaKnown RBP6.67□□□□□ -1.34
VPS13C-208ENST00000559119 TRPM5Q9NZQ8 1165 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 CLCA2Q9UQC9 943 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 CD2APQ9Y5K6 639 aa6.67□□□□□ -1.34
VPS13C-208ENST00000559119 GRID2IPA4D2P6 1211 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 AHRRA9YTQ3 701 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 TGM5O43548 720 aa6.66□□□□□ -1.34
VPS13C-208ENST00000559119 POU3F2P20265 443 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-208ENST00000559119 APOBEC3AP31941 199 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-208ENST00000559119 LSP1P33241 339 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms