RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 RETREG3Q86VR2 466 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 RNF169Q8NCN4 708 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 SMRP1Q8NCR6 262 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 MICAL1Q8TDZ2 1067 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 EPS8L1Q8TE68 723 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 GTF3C6Q969F1 213 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 ZNF668Q96K58 619 aaPredicted RBP9.02□□□□□ -0.97
TRAF3-205ENST00000558700 NLRP4Q96MN2 994 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 ZNF558Q96NG5 402 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 CWH43Q9H720 699 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 CD320Q9NPF0 282 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 ENTPD7Q9NQZ7 604 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 CHST12Q9NRB3 414 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 TYW1Q9NV66 732 aaKnown RBP9.02□□□□□ -0.97
TRAF3-205ENST00000558700 SUCLA2Q9P2R7 463 aaPredicted RBP9.02□□□□□ -0.97
TRAF3-205ENST00000558700 HCSTQ9UBK5 93 aa9.02□□□□□ -0.97
TRAF3-205ENST00000558700 PIN4Q9Y237 131 aaKnown RBP9.02□□□□□ -0.97
TRAF3-205ENST00000558700 A0A087WZ62 844 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 A0A0U1RQF3 1178 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 PRR33A8MZF0 331 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 DCXO43602 365 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 STBD1O95210 358 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 BAG4O95429 457 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 P4HBP07237 508 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 FGFR4P22455 802 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 PLCB3Q01970 1234 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 DLX2Q07687 328 aaPredicted RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 DRP2Q13474 957 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 TRIM29Q14134 588 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 FOXD4L5Q5VV16 416 aaPredicted RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 PLPP4Q5VZY2 271 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 TWF2Q6IBS0 349 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 NCAPH2Q6IBW4 605 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 KCNT2Q6UVM3 1135 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 ANO5Q75V66 913 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 CATSPER4Q7RTX7 472 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 RBM23Q86U06 439 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 RHPN2Q8IUC4 686 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 SLFN12Q8IYM2 578 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 HELQQ8TDG4 1101 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 PSPC1Q8WXF1 523 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 FOXD4L4Q8WXT5 416 aaPredicted RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 MRPS27Q92552 414 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 MSLNLQ96KJ4 702 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 CEP170P1Q96L14 293 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 CASD1Q96PB1 797 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 UCN2Q96RP3 112 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 CEP89Q96ST8 783 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 SH2D3AQ9BRG2 576 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 FDXACB1Q9BRP7 624 aaPredicted RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 LXNQ9BS40 222 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 LRFN3Q9BTN0 628 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 TLE6Q9H808 572 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 CYP26B1Q9NR63 512 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 RNF19AQ9NV58 838 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 PUF60Q9UHX1 559 aaKnown RBP9.01□□□□□ -0.97
TRAF3-205ENST00000558700 PCDHGC5Q9Y5F6 944 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 COL4A3BPQ9Y5P4 624 aa9.01□□□□□ -0.97
TRAF3-205ENST00000558700 FAM86C2PA6NEL3 165 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 EML1O00423 815 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 FSCN2O14926 492 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 ATP9BO43861 1147 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 CTDNEP1O95476 244 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 EYA4O95677 639 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 GLP2RO95838 553 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 ATF7P17544 494 aaPredicted RBP9□□□□□ -0.97
TRAF3-205ENST00000558700 YWHABP31946 246 aaKnown RBP9□□□□□ -0.97
TRAF3-205ENST00000558700 PLA2G5P39877 138 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 PHKA2P46019 1235 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 KRT17Q04695 432 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 COASYQ13057 564 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 NR5A1Q13285 461 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 EMC2Q15006 297 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 EPHA7Q15375 998 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 DUSP6Q16828 381 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 CLLU1OSQ5K130 101 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 DESI1Q6ICB0 168 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 GLB1LQ6UWU2 654 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 OTUD6AQ7L8S5 288 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 ZNF598Q86UK7 904 aaKnown RBP9□□□□□ -0.97
TRAF3-205ENST00000558700 C4orf19Q8IY42 314 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 TCP11Q8WWU5 503 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 CCDC43Q96MW1 224 aaKnown RBP9□□□□□ -0.97
TRAF3-205ENST00000558700 TCF25Q9BQ70 676 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 SLC4A5Q9BY07 1137 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 ZSWIM4Q9H7M6 989 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 NGRNQ9NPE2 291 aaKnown RBP9□□□□□ -0.97
TRAF3-205ENST00000558700 C11orf16Q9NQ32 467 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 GJB4Q9NTQ9 266 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 SPG21Q9NZD8 308 aa9□□□□□ -0.97
TRAF3-205ENST00000558700 BARX2Q9UMQ3 279 aaPredicted RBP9□□□□□ -0.97
TRAF3-205ENST00000558700 FAM205CA6NFA0 338 aa8.99□□□□□ -0.97
TRAF3-205ENST00000558700 ARHGAP33O14559 1287 aa8.99□□□□□ -0.97
TRAF3-205ENST00000558700 ZC3H11AO75152 810 aaKnown RBP eCLIP8.99□□□□□ -0.97
TRAF3-205ENST00000558700 CSDE1O75534 798 aaKnown RBP8.99□□□□□ -0.97
TRAF3-205ENST00000558700 LARGE1O95461 756 aa8.99□□□□□ -0.97
TRAF3-205ENST00000558700 PBX3P40426 434 aa8.99□□□□□ -0.97
TRAF3-205ENST00000558700 ALDH7A1P49419 539 aaKnown RBP8.99□□□□□ -0.97
TRAF3-205ENST00000558700 NEK4P51957 841 aa8.99□□□□□ -0.97
TRAF3-205ENST00000558700 NPEPPSP55786 919 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms