RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ZKSCAN5Q9Y2L8 839 aa4.07□□□□□ -1.76
VPS13C-205ENST00000558088 GAGE12BA1L429 117 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 GAGE12HA6NDE8 117 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 PRR5-ARHGAP8B1AHC4 643 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 RNASET2O00584 256 aaKnown RBP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 GAAP10253 952 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 HSP90B1P14625 803 aaKnown RBP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 SLC9A1P19634 815 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 XPAP23025 273 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 IL12RB1P42701 662 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 ATXN1P54253 815 aaKnown RBP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 VPS72Q15906 364 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 FNDC3BQ53EP0 1204 aaKnown RBP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 KANSL1Q7Z3B3 1105 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 PASD1Q8IV76 773 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 BEND2Q8NDZ0 799 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 FERMT2Q96AC1 680 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 ELF4Q99607 663 aaPredicted RBP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 NDC1Q9BTX1 674 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 IGSF5Q9NSI5 407 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 ING3Q9NXR8 418 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 TRPM5Q9NZQ8 1165 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.06□□□□□ -1.76
VPS13C-205ENST00000558088 SPO11Q9Y5K1 396 aa4.06□□□□□ -1.76
VPS13C-205ENST00000558088 CBX4O00257 560 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 KIAA0355O15063 1070 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 NRP2O60462 931 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 PCDH8O95206 1070 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 CD40P25942 277 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 APOBEC3AP31941 199 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-205ENST00000558088 C21orf58P58505 322 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 MXRA7P84157 204 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 DUSP2Q05923 314 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 RBL2Q08999 1139 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 DDB1Q16531 1140 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 CFAP100Q494V2 611 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 ZKSCAN2Q63HK3 967 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 ESRP1Q6NXG1 681 aaKnown RBP4.05□□□□□ -1.76
VPS13C-205ENST00000558088 OLFML1Q6UWY5 402 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 GDF7Q7Z4P5 450 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 CDYL2Q8N8U2 506 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 OR52N2Q8NGI0 321 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 NELL1Q92832 810 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 CAVIN3Q969G5 261 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 SERHL2Q9H4I8 314 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 PCDHB6Q9Y5E3 794 aa4.05□□□□□ -1.76
VPS13C-205ENST00000558088 CENPVL1A0A0U1RR11 272 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 GAS7O60861 476 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 HLA-DOAP06340 250 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 JMJD7P0C870 316 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 SPATA31D3P0C874 917 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 CDK4P11802 303 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 CASRP41180 1078 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 GZMKP49863 264 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 NRG3P56975 720 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 ZNF460Q14592 562 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 LMBR1LQ6UX01 489 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 Q6YL49 198 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 SPATA31D4Q6ZUB0 917 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 ESPNLQ6ZVH7 1005 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 DOK3Q7L591 496 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 CXorf67Q86X51 503 aaPredicted RBP4.04□□□□□ -1.76
VPS13C-205ENST00000558088 PLXDC1Q8IUK5 500 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 RTF1Q92541 710 aaKnown RBP4.04□□□□□ -1.76
VPS13C-205ENST00000558088 C8orf37Q96NL8 207 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 ZNF768Q9H5H4 540 aaKnown RBP4.04□□□□□ -1.76
VPS13C-205ENST00000558088 AKIP1Q9NQ31 210 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 IFT57Q9NWB7 429 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 OXSMQ9NWU1 459 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 PODXL2Q9NZ53 605 aa4.04□□□□□ -1.76
VPS13C-205ENST00000558088 USP36Q9P275 1121 aaKnown RBP4.04□□□□□ -1.76
VPS13C-205ENST00000558088 MYPNQ86TC9 1320 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 A0A0A6YYK5 440 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 AHRRA9YTQ3 701 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 DIRC3C9JPN6 131 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 DNAJC8O75937 253 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 NDUFA10O95299 355 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 ZEB1P37275 1124 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 BLOC1S1P78537 153 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 GUCY1B3Q02153 619 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 MRPL49Q13405 166 aaKnown RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 CDCA2Q69YH5 1023 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 UNQ6494/PRO21346Q6UXR6 183 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 RD3Q7Z3Z2 195 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 ARHGEF19Q8IW93 802 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 CMTR2Q8IYT2 770 aaKnown RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 PMFBP1Q8TBY8 1022 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 BBC3Q96PG8 261 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 SOX7Q9BT81 388 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 CPEB1Q9BZB8 566 aaKnown RBP4.03□□□□□ -1.76
VPS13C-205ENST00000558088 WDR11Q9BZH6 1224 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 ENKD1Q9H0I2 346 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 SPON1Q9HCB6 807 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 ANKFY1Q9P2R3 1169 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 INSL6Q9Y581 213 aa4.03□□□□□ -1.76
VPS13C-205ENST00000558088 SPATA31A6Q5VVP1 1343 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 TMEM200CA6NKL6 621 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 LPXNO60711 386 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 NCR1O76036 304 aa4.02□□□□□ -1.77
VPS13C-205ENST00000558088 HKR1P10072 659 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms