RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 RSPH1Q8WYR4 309 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 ESYT1Q9BSJ8 1104 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 EMILIN2Q9BXX0 1053 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 ZMYND12Q9H0C1 365 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 SEMA4AQ9H3S1 761 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 UNC45AQ9H3U1 944 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 WDR6Q9NNW5 1121 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 NRBP2Q9NSY0 501 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 MARCH5Q9NX47 278 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 EPS15L1Q9UBC2 864 aa9.2□□□□□ -0.94
CCDC88C-214ENST00000557507 KLF18A0A0U1RQI7 1052 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 CARNS1A5YM72 827 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 POTEMA6NI47 508 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 ZNF623O75123 536 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 URODP06132 367 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 SP9P0CG40 484 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 SRFP11831 508 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 SKIP12755 728 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 GLULP15104 373 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 RFX1P22670 979 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 RAB27AP51159 221 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 JAK3P52333 1124 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 EXOSC10Q01780 885 aaKnown RBP9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 PUM1Q14671 1186 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 ADCK5Q3MIX3 580 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 POTEGQ6S5H5 508 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 TAS1R1Q7RTX1 841 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 CATSPER4Q7RTX7 472 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 RHPN2Q8IUC4 686 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 SLC44A3Q8N4M1 653 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 ST13P5Q8NFI4 369 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 SLC5A5Q92911 643 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 ZNF707Q96C28 371 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 NLRP4Q96MN2 994 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 HINFPQ9BQA5 517 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 HERC2P3Q9BVR0 1158 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 FOXQ1Q9C009 403 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 ANO2Q9NQ90 1003 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 ARHGEF3Q9NR81 526 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 MRPL17Q9NRX2 175 aaKnown RBP9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 AGPAT5Q9NUQ2 364 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 PCDHB2Q9Y5E7 798 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 SDK1Q7Z5N4 2213 aa9.19□□□□□ -0.94
CCDC88C-214ENST00000557507 CCDC195A0A1B0GUA6 201 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 F8W810 466 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 NRP1O14786 923 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 TEX28O15482 410 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 GAS7O60861 476 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 LRRN2O75325 713 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 KRT37O76014 449 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 EFEMP2O95967 443 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 GLUD1P00367 558 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 POMCP01189 267 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 SOD2P04179 222 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 SFNP31947 248 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 ADD1P35611 737 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 AK2P54819 239 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 HTR4Q13639 388 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 NID2Q14112 1375 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 UBXN11Q5T124 520 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 LRCH2Q5VUJ6 765 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 PLA2G4FQ68DD2 849 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 GET4Q7L5D6 327 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 ZNF410Q86VK4 478 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 RNF168Q8IYW5 571 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 MAML2Q8IZL2 1156 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 URGCPQ8TCY9 931 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 CHD6Q8TD26 2715 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 SMG7Q92540 1137 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 RPS6KC1Q96S38 1066 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 RIT2Q99578 217 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 TMEM175Q9BSA9 504 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 TEKT3Q9BXF9 490 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 NIFKQ9BYG3 293 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 RHOBTB2Q9BYZ6 727 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 RSAD1Q9HA92 442 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 IFT122Q9HBG6 1241 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 C6orf50Q9HD87 102 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 DLL3Q9NYJ7 618 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 SUCLA2Q9P2R7 463 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 FAN1Q9Y2M0 1017 aa9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 PRG3Q9Y2Y8 225 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-214ENST00000557507 CITO14578 2027 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 GREB1Q4ZG55 1949 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 KIF26AQ9ULI4 1882 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 CNTNAP2Q9UHC6 1331 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 EIF5BO60841 1220 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 PSMD10O75832 226 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 PAPLNO95428 1278 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 ADH1AP07327 375 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 SPATA31D3P0C874 917 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 GLUD2P49448 558 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 RCAN1P53805 252 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 NONOQ15233 471 aaKnown RBP eCLIP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 XKR3Q5GH77 459 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 PHLDB3Q6NSJ2 640 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 ZC3H14Q6PJT7 736 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 B3GNT9Q6UX72 402 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 SPATA31D4Q6ZUB0 917 aa9.17□□□□□ -0.94
CCDC88C-214ENST00000557507 ANO5Q75V66 913 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms