RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 TRABDQ9H4I3 376 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 VCX3AQ9NNX9 186 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 A8MUI8 341 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 UCHL3P15374 230 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 PON1P27169 355 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 VAMP7P51809 220 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 PRELPP51888 382 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 ARFIP2P53365 341 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 AP2B1P63010 937 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 NOP14P78316 857 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 NAALADL2Q58DX5 795 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 GUF1Q8N442 669 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 GBP7Q8N8V2 638 aaPredicted RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TRIM11Q96F44 468 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TRIM56Q9BRZ2 755 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 HSD3B7Q9H2F3 369 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 REXO2Q9Y3B8 237 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 SLIT3O75094 1523 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 E2F8A0AVK6 867 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 FAM196BA6NMK8 535 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 RNF225M0QZC1 329 aaPredicted RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 ZBTB5O15062 677 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 SLC16A4O15374 487 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 ZBED4O75132 1171 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 PPFIA2O75334 1257 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 GGPS1O95749 300 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 SKOR1P84550 965 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TRAF1Q13077 416 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TAF1BQ53T94 588 aaPredicted RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TTI2Q6NXR4 508 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 LRGUKQ96M69 825 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TMEM206Q9H813 350 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 DMGDHQ9UI17 866 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TRAF3IP3Q9Y228 551 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 EMSYQ7Z589 1322 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 JCADQ9P266 1359 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 RTN2O75298 545 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 SETSIPP0DME0 302 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 ALAS1P13196 640 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TNFRSF8P28908 595 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 BYSLQ13895 437 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TRADDQ15628 312 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 GRAMD1BQ3KR37 738 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 CLEC10AQ8IUN9 316 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 KIAA0895Q8NCT3 520 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 DNAJC9Q8WXX5 260 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 CELF1Q92879 486 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 ELMO3Q96BJ8 720 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 NSUN4Q96CB9 384 aaKnown RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 PPP1R16BQ96T49 567 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TTC1Q99614 292 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 CARD10Q9BWT7 1032 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 NUF2Q9BZD4 464 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 MYLK2Q9H1R3 596 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 SUCLA2Q9P2R7 463 aaPredicted RBP5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TRIM33Q9UPN9 1127 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 TTLL3Q9Y4R7 772 aa5.32□□□□□ -1.56
SYNE2-223ENST00000557005 F8VZ95 297 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MCF2LO15068 1137 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 AP1G2O75843 785 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 UBOX5O94941 541 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CSF1RP07333 972 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ITGA4P13612 1032 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 PSMA2P25787 234 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 COILP38432 576 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CPA2P48052 419 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 GPSM2P81274 684 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TMPRSS15P98073 1019 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 KCNMA1Q12791 1236 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 DNAJC24Q6P3W2 148 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ZNF571Q7Z3V5 609 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 COL23A1Q86Y22 540 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 RNF34Q969K3 372 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ACSF2Q96CM8 615 aaPredicted RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MTMR8Q96EF0 704 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ERGIC2Q96RQ1 377 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CCPG1Q9ULG6 757 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MYO3BQ8WXR4 1341 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CHD2O14647 1828 aaKnown RBP5.31□□□□□ -1.56
SYNE2-223ENST00000557005 LOC102724428A0A0B4J2F2 783 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 COPEO14579 308 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 COMTP21964 271 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ATP2B4P23634 1241 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ARSEP51690 589 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SIK1P57059 783 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 KDSRQ06136 332 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 OVGP1Q12889 678 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CDO1Q16878 200 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MMEL1Q495T6 779 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ACCSLQ4AC99 568 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MIIPQ5JXC2 388 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 ATG16L1Q676U5 607 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 RAPH1Q70E73 1250 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TRIM59Q8IWR1 403 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SMC1BQ8NDV3 1235 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 TEKT1Q969V4 418 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 MAGEB18Q96M61 343 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 SLC13A1Q9BZW2 595 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 CYP4F11Q9HBI6 524 aa5.31□□□□□ -1.56
SYNE2-223ENST00000557005 FAM217BQ9NTX9 383 aaPredicted RBP5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms