RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 PCBP1Q15365 356 aaKnown RBP eCLIP19.27■□□□□ 0.68
SHMT2-225ENST00000556798 LONRF3Q496Y0 759 aa19.27■□□□□ 0.68
SHMT2-225ENST00000556798 PPP4R3CPQ6ZMV5 832 aa19.27■□□□□ 0.68
SHMT2-225ENST00000556798 TAS1R3Q7RTX0 852 aa19.27■□□□□ 0.68
SHMT2-225ENST00000556798 TRIM9Q9C026 710 aa19.27■□□□□ 0.68
SHMT2-225ENST00000556798 BLZF1Q9H2G9 400 aa19.27■□□□□ 0.68
SHMT2-225ENST00000556798 CNTNAP2Q9UHC6 1331 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 LCHNA4D1U4 455 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 K7ENM7 598 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 K7ERI5 159 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 TRAK2O60296 914 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 GADD45BO75293 160 aaPredicted RBP19.26■□□□□ 0.67
SHMT2-225ENST00000556798 SLFN14P0C7P3 912 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 DNAJB2P25686 324 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 GATMP50440 423 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 SMTNP53814 917 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 NCKAP1LP55160 1127 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 ASIC1P78348 528 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 PRPF4BQ13523 1007 aaKnown RBP19.26■□□□□ 0.67
SHMT2-225ENST00000556798 FAM187BQ17R55 369 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 CSPP1Q1MSJ5 1256 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 TMEM132AQ24JP5 1023 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 NOTUMQ6P988 496 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 ECHDC2Q86YB7 292 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 NPAS4Q8IUM7 802 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 FAM178BQ8IXR5 827 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 RNF169Q8NCN4 708 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 TMEM161BQ8NDZ6 487 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 PRIMPOLQ96LW4 560 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 NTPCRQ9BSD7 190 aaKnown RBP19.26■□□□□ 0.67
SHMT2-225ENST00000556798 NKX2-4Q9H2Z4 354 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 TBC1D7Q9P0N9 293 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 LRFN2Q9ULH4 789 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 PCDHA11Q9Y5I1 949 aa19.26■□□□□ 0.67
SHMT2-225ENST00000556798 TRIP11Q15643 1979 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 RALGAPA2Q2PPJ7 1873 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 ACKR2O00590 384 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 MAPTP10636 758 aaKnown RBP19.25■□□□□ 0.67
SHMT2-225ENST00000556798 NMT1P30419 496 aaKnown RBP19.25■□□□□ 0.67
SHMT2-225ENST00000556798 AXLP30530 894 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 FXR1P51114 621 aaKnown RBP eCLIP19.25■□□□□ 0.67
SHMT2-225ENST00000556798 AMPD3Q01432 767 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 NCBP1Q09161 790 aaKnown RBP19.25■□□□□ 0.67
SHMT2-225ENST00000556798 RAB30Q15771 203 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 UBXN11Q5T124 520 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 CRIPAKQ8N1N5 446 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 TMEM87AQ8NBN3 555 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 PAGE5Q96GU1 130 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 FIZ1Q96SL8 496 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 YME1L1Q96TA2 773 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 EIF2AQ9BY44 585 aaKnown RBP19.25■□□□□ 0.67
SHMT2-225ENST00000556798 LRRC27Q9C0I9 530 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 TMEM134Q9H6X4 195 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 FAM105AQ9NUU6 356 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 PANK4Q9NVE7 773 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 MSRAQ9UJ68 235 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 PCDHB7Q9Y5E2 793 aa19.25■□□□□ 0.67
SHMT2-225ENST00000556798 TDRD15B5MCY1 1934 aaKnown RBP19.25■□□□□ 0.67
SHMT2-225ENST00000556798 A0A0U1RQF3 1178 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 FRMD3A2A2Y4 597 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 ARHGEF15O94989 841 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 ZNF202O95125 648 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 CA3P07451 260 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 STAG3L1P0CL83 205 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 FGFR1P11362 822 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 ATF7P17544 494 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-225ENST00000556798 FAM189BP81408 668 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 COASYQ13057 564 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 CUL4BQ13620 913 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 NT5DC1Q5TFE4 455 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 FAM43BQ6ZT52 329 aaPredicted RBP19.24■□□□□ 0.67
SHMT2-225ENST00000556798 HAUS6Q7Z4H7 955 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 LPPQ93052 612 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 TIFAQ96CG3 184 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 RAD9AQ99638 391 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 C7orf25Q9BPX7 421 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 PDZD7Q9H5P4 517 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 TMEM161AQ9NX61 479 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 USP25Q9UHP3 1055 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 KCNG1Q9UIX4 513 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 PCDHB2Q9Y5E7 798 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 MYO9BQ13459 2157 aa19.24■□□□□ 0.67
SHMT2-225ENST00000556798 CHD9Q3L8U1 2897 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 A0A1B0GUA9 196 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 NPTXRO95502 500 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 GAP43P17677 238 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 HTRA4P83105 476 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-225ENST00000556798 PAN2Q504Q3 1202 aaKnown RBP19.23■□□□□ 0.67
SHMT2-225ENST00000556798 HERC4Q5GLZ8 1057 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-225ENST00000556798 ATF7IP2Q5U623 682 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 EEF1DP3Q658K8 133 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 KRBA2Q6ZNG9 492 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 ZNF598Q86UK7 904 aaKnown RBP19.23■□□□□ 0.67
SHMT2-225ENST00000556798 FMR1NBQ8N0W7 255 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-225ENST00000556798 CNNM3Q8NE01 707 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 HPS3Q969F9 1004 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 CCDC51Q96ER9 411 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 TRAIPQ9BWF2 469 aa19.23■□□□□ 0.67
SHMT2-225ENST00000556798 RC3H2Q9HBD1 1191 aaKnown RBP19.23■□□□□ 0.67
SHMT2-225ENST00000556798 INSL6Q9Y581 213 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms