RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 LLGL2Q6P1M3 1020 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 NEUROG2Q9H2A3 272 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 ZNF148Q9UQR1 794 aa13.07□□□□□ -0.32
CCDC88C-211ENST00000556726 MYO3BQ8WXR4 1341 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 GMNCA6NCL1 334 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 DCDC2CA8MYV0 355 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 RASGRF2O14827 1237 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 TGFB1I1O43294 461 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 CAND2O75155 1236 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 GUCY2CP25092 1073 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 YWHABP31946 246 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 PIK3CAP42336 1068 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 NSFP46459 744 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 QARSP47897 775 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 AARSP49588 968 aaKnown RBP eCLIP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 POLGP54098 1239 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 SEMA3FQ13275 785 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 ZCWPW2Q504Y3 356 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 ZNF720Q7Z2F6 126 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 USP37Q86T82 979 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 SLC47A2Q86VL8 602 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 LNX1Q8TBB1 728 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 TAAR1Q96RJ0 339 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 PSMD1Q99460 953 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 COL4A1P02462 1669 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 WDR91A4D1P6 747 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 PRLRP16471 622 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 HNRNPH3P31942 346 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 INTS8Q75QN2 995 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 OTOP1Q7RTM1 612 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 TBC1D1Q86TI0 1168 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 CDR2LQ86X02 465 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 JAMLQ86YT9 394 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 ETNPPLQ8TBG4 499 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 INPP4AQ96PE3 977 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 ISCUQ9H1K1 167 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 EXOC7Q9UPT5 735 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 AGTPBP1Q9UPW5 1226 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 IGSF9BQ9UPX0 1349 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 CASZ1Q86V15 1759 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 PJA2O43164 708 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 GBP2P32456 591 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 FAM182AQ5T1J6 154 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 IL31RAQ8NI17 732 aa13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.06□□□□□ -0.32
CCDC88C-211ENST00000556726 FOXO6A8MYZ6 492 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 ECEL1O95672 775 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 P4HBP07237 508 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 STX2P32856 288 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 SMAD1Q15797 465 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 CRY2Q49AN0 593 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 C9orf72Q96LT7 481 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 UBXN6Q9BZV1 441 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 EPN3Q9H201 632 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 ZHX2Q9Y6X8 837 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 GJB6O95452 261 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 NT5C2P49902 561 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 NUGGCQ68CJ6 796 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 PHLDB3Q6NSJ2 640 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 TMEM270Q6UE05 265 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 RNF207Q6ZRF8 634 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 DEPTORQ8TB45 409 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 MYCBPAPQ8TBZ2 947 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 EPS8L3Q8TE67 593 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 TMEM143Q96AN5 459 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 PICK1Q9NRD5 415 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 NKIRAS1Q9NYS0 192 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 NXF1Q9UBU9 619 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 ZNF70Q9UC06 446 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 PASKQ96RG2 1323 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 EDIL3O43854 480 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 SNHG28P0DPA3 235 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 PPP3CAQ08209 521 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 RASA3Q14644 834 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 PTGISQ16647 500 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 KIAA1755Q5JYT7 1200 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 DACT2Q5SW24 774 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 SRRM1Q8IYB3 904 aaKnown RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 SYN2Q92777 582 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 SEMA4AQ9H3S1 761 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 TMEM206Q9H813 350 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 TRAF3IP3Q9Y228 551 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 PCDHGC5Q9Y5F6 944 aa13.05□□□□□ -0.32
CCDC88C-211ENST00000556726 ROBO1Q9Y6N7 1651 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 MYH3P11055 1940 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 GAS8O95995 478 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 SRGAP2CP0DJJ0 459 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 ATF2P15336 505 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 IGBP1P78318 339 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 EN1Q05925 392 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 MTMR2Q13614 643 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 BAATQ14032 418 aaPredicted RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 TMED2Q15363 201 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 PRMT1Q99873 361 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 ROBO3Q96MS0 1386 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 USP54Q70EL1 1684 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 SHBGP04278 402 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 CHN1P15882 459 aa13.04□□□□□ -0.32
CCDC88C-211ENST00000556726 RPS6P62753 249 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms