RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CSRNP2Q9H175 543 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 C2orf40Q9H1Z8 148 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 ALG13Q9NP73 1137 aaKnown RBP15.17■□□□□ 0.02
SHMT2-219ENST00000555563 PRMT7Q9NVM4 692 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-219ENST00000555563 PLAGL2Q9UPG8 496 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 CNTNAP2Q9UHC6 1331 aa15.17■□□□□ 0.02
SHMT2-219ENST00000555563 PLA2G4BP0C869 781 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 LAG3P18627 525 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 PLCG1P19174 1290 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 NASPP49321 788 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 SLC12A3P55017 1021 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 NCBP1Q09161 790 aaKnown RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 PKP1Q13835 747 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 KARSQ15046 597 aaKnown RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 FAM187BQ17R55 369 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 TIGD5Q53EQ6 642 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 NAALADL2Q58DX5 795 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 GLB1LQ6UWU2 654 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 AGMOQ6ZNB7 445 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 USP49Q70CQ1 688 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 CDR2LQ86X02 465 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 SYT2Q8N9I0 419 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 SMG8Q8ND04 991 aaKnown RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 RASSF8Q8NHQ8 419 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 PGBD4Q96DM1 585 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 CALML4Q96GE6 196 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 PRIMPOLQ96LW4 560 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 DRC1Q96MC2 740 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 MRPL9Q9BYD2 267 aaKnown RBP15.16■□□□□ 0.02
SHMT2-219ENST00000555563 LMAN2LQ9H0V9 348 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 FZD8Q9H461 694 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 AAASQ9NRG9 546 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 THEGQ9P2T0 379 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 INPP5FQ9Y2H2 1132 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 IPPQ9Y573 584 aa15.16■□□□□ 0.02
SHMT2-219ENST00000555563 TTLL13PA6NNM8 815 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 TNFRSF10AO00220 468 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 OFD1O75665 1012 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 F13A1P00488 732 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 EDN1P05305 212 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 PRKCBP05771 671 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 ZSCAN22P10073 491 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 LIG1P18858 919 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 NCLP19338 710 aaKnown RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 GUCY2CP25092 1073 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 DNAJB1P25685 340 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 PBX3P40426 434 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 PEX3P56589 373 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 RAD51AP2Q09MP3 1159 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 DMP1Q13316 513 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 SLC39A14Q15043 492 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 MAPK6Q16659 721 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 SPECC1Q5M775 1068 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 MRPL10Q7Z7H8 261 aaKnown RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 THNSL1Q8IYQ7 743 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 EPSTI1Q96J88 318 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 CLIC6Q96NY7 704 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 CCSER1Q9C0I3 900 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 NXF3Q9H4D5 531 aaKnown RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 RSAD1Q9HA92 442 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 BLOC1S4Q9NUP1 217 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 HES2Q9Y543 173 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 PCDHB12Q9Y5F1 795 aa15.15■□□□□ 0.02
SHMT2-219ENST00000555563 SRPRBQ9Y5M8 271 aaKnown RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 MORC2Q9Y6X9 1032 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-219ENST00000555563 A0A1B0GUA9 196 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 FGF18O76093 207 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 NPTXRO95502 500 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 PDIA4P13667 645 aaKnown RBP15.14■□□□□ 0.01
SHMT2-219ENST00000555563 NPTX2P47972 431 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 PRPF4BQ13523 1007 aaKnown RBP15.14■□□□□ 0.01
SHMT2-219ENST00000555563 CAMK1Q14012 370 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 CSPP1Q1MSJ5 1256 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 NOMO2Q5JPE7 1267 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 SLC27A1Q6PCB7 646 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 KCNT2Q6UVM3 1135 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 KRI1Q8N9T8 703 aaKnown RBP15.14■□□□□ 0.01
SHMT2-219ENST00000555563 SPPL3Q8TCT6 385 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 ATXN2LQ8WWM7 1075 aaKnown RBP15.14■□□□□ 0.01
SHMT2-219ENST00000555563 RSPH1Q8WYR4 309 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 RAD54LQ92698 747 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 ZNF396Q96N95 335 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-219ENST00000555563 ZNF558Q96NG5 402 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 TIPINQ9BVW5 301 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 TRIM6Q9C030 488 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-219ENST00000555563 PDZD7Q9H5P4 517 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 TBC1D13Q9NVG8 400 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 KCND2Q9NZV8 630 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 USP20Q9Y2K6 914 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 PHLPP2Q6ZVD8 1323 aa15.14■□□□□ 0.01
SHMT2-219ENST00000555563 NPHP3-ACAD11A0A0J9YXS1 232 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 CCDC169A6NNP5 214 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 ACKR2O00590 384 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 TRANK1O15050 2925 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 ITGA4P13612 1032 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 AFF1P51825 1210 aaKnown RBP15.13■□□□□ 0.01
SHMT2-219ENST00000555563 EFNA5P52803 228 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-219ENST00000555563 MCM6Q14566 821 aa15.13■□□□□ 0.01
SHMT2-219ENST00000555563 STK38Q15208 465 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms