RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 LAMTOR4Q0VGL1 99 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 CAMK4Q16566 473 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 AXDND1Q5T1B0 1012 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-214ENST00000554604 SASS6Q6UVJ0 657 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 ERMNQ8TAM6 284 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 PPP2R3CQ969Q6 453 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 TMEM117Q9H0C3 514 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 ANKEF1Q9NU02 776 aa13.78□□□□□ -0.2
SHMT2-214ENST00000554604 TYW1Q9NV66 732 aaKnown RBP13.78□□□□□ -0.2
SHMT2-214ENST00000554604 NCK2O43639 380 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 CUTAO60888 179 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 DGAT1O75907 488 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 EOMESO95936 686 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 SKIP12755 728 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 TECP42680 631 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 PHKA2P46019 1235 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 TRAPPC10P48553 1259 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 MXD4Q14582 209 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-214ENST00000554604 SRGAP1Q7Z6B7 1085 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 THNSL1Q8IYQ7 743 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 RNF149Q8NC42 400 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 FAM200AQ8TCP9 573 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 SPPL3Q8TCT6 385 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 PIGOQ8TEQ8 1089 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 IFT122Q9HBG6 1241 aa13.77□□□□□ -0.21
SHMT2-214ENST00000554604 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-214ENST00000554604 TNFRSF10AO00220 468 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 LAG3P18627 525 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 TFDP1Q14186 410 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 LRRC43Q8N309 656 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 COLGALT1Q8NBJ5 622 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 HELQQ8TDG4 1101 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 POF1BQ8WVV4 589 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 TIGD1Q96MW7 591 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 CASD1Q96PB1 797 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 TUFT1Q9NNX1 390 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 CLDND1Q9NY35 253 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 HCSTQ9UBK5 93 aa13.76□□□□□ -0.21
SHMT2-214ENST00000554604 MUC3AQ02505 3323 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 FGF18O76093 207 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 ERLIN2O94905 339 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 RARRES1P49788 294 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 TOB1P50616 345 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-214ENST00000554604 RAB27AP51159 221 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 NDUFA8P51970 172 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 UBE3AQ05086 875 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 NCBP1Q09161 790 aaKnown RBP13.75□□□□□ -0.21
SHMT2-214ENST00000554604 CLLU1OSQ5K130 101 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 CATSPER3Q86XQ3 398 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 MICAL1Q8TDZ2 1067 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 PABPC5Q96DU9 382 aaKnown RBP13.75□□□□□ -0.21
SHMT2-214ENST00000554604 NECAB3Q96P71 396 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-214ENST00000554604 NACC1Q96RE7 527 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 POLR3CQ9BUI4 534 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-214ENST00000554604 TRAIPQ9BWF2 469 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 MRPL9Q9BYD2 267 aaKnown RBP13.75□□□□□ -0.21
SHMT2-214ENST00000554604 IGFLR1Q9H665 355 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 MINDY3Q9H8M7 445 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 XPNPEP1Q9NQW7 623 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 AGPAT5Q9NUQ2 364 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 FAM105AQ9NUU6 356 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 RNF19AQ9NV58 838 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 HPSEQ9Y251 543 aa13.75□□□□□ -0.21
SHMT2-214ENST00000554604 A0A1B0GVL5 298 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 H3BQ06 376 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-214ENST00000554604 USO1O60763 962 aaKnown RBP13.74□□□□□ -0.21
SHMT2-214ENST00000554604 MED24O75448 989 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 BMP15O95972 392 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 SPATA31C1P0DKV0 1188 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 ATF7P17544 494 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-214ENST00000554604 DNAJB1P25685 340 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 CAMK1Q14012 370 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 STX1AQ16623 288 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 LEXMQ3ZCV2 418 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 LONRF3Q496Y0 759 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 ANO6Q4KMQ2 910 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 RESP18Q5W5W9 173 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 HAUS3Q68CZ6 603 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 KCNT2Q6UVM3 1135 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 GLB1LQ6UWU2 654 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 ZNF598Q86UK7 904 aaKnown RBP13.74□□□□□ -0.21
SHMT2-214ENST00000554604 PGBD4Q96DM1 585 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 ZNF558Q96NG5 402 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 RAB34Q9BZG1 259 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 CWH43Q9H720 699 aa13.74□□□□□ -0.21
SHMT2-214ENST00000554604 PUF60Q9UHX1 559 aaKnown RBP13.74□□□□□ -0.21
SHMT2-214ENST00000554604 TDRD15B5MCY1 1934 aaKnown RBP13.74□□□□□ -0.21
SHMT2-214ENST00000554604 INO80B-WBP1J3KQ70 363 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PFKFB1P16118 471 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 RPA1P27694 616 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 MARCKSP29966 332 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PPM1AP35813 382 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 CCT6AP40227 531 aaKnown RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 ALDH7A1P49419 539 aaKnown RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PTENP60484 403 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 KRT17Q04695 432 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 RNASELQ05823 741 aaKnown RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 HYAL1Q12794 435 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PTGDRQ13258 359 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PCBP1Q15365 356 aaKnown RBP eCLIP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms