RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 AZI2Q9H6S1 392 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 EFCC1Q9HA90 598 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 APEX2Q9UBZ4 518 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 DNAJC12Q9UKB3 198 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 USP20Q9Y2K6 914 aa28.64■■■□□ 2.18
CCDC88C-205ENST00000553403 CCL15-CCL14A0A0B4J2E2 113 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 BTBD19C9JJ37 291 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 ADRB2P07550 413 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 GCLCP48506 637 aaPredicted RBP28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 DLG4P78352 724 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 SNRNP35Q16560 246 aaKnown RBP28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 CCL15Q16663 113 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 ERCC6LQ2NKX8 1250 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 PAPD7Q5XG87 772 aaKnown RBP28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 CCDC62Q6P9F0 684 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 GJB7Q6PEY0 223 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 TAS1R3Q7RTX0 852 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 TMC2Q8TDI7 906 aa28.64■■■□□ 2.17
CCDC88C-205ENST00000553403 MACROD2A1Z1Q3 448 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 PPP3CAQ08209 521 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 PLPPR4Q7Z2D5 763 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 TRAPPC11Q7Z392 1133 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 SRGAP1Q7Z6B7 1085 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 RNF10Q8N5U6 811 aaKnown RBP28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 ZSWIM2Q8NEG5 633 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 PLEKHO2Q8TD55 490 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 MORF4L1Q9UBU8 362 aa28.63■■■□□ 2.17
CCDC88C-205ENST00000553403 ATP8B3O60423 1300 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 ZNFX1Q9P2E3 1918 aaKnown RBP28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 GFPT2O94808 682 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 GLRA2P23416 452 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 SOX5P35711 763 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 PTK2Q05397 1052 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 EPC2Q52LR7 807 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 ZNF571Q7Z3V5 609 aaPredicted RBP28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 ASAP3Q8TDY4 903 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 BRI3BPQ8WY22 251 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 TMEM143Q96AN5 459 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 MFSD14AQ96MC6 490 aa28.62■■■□□ 2.17
CCDC88C-205ENST00000553403 A0A087X0T9 212 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 GOLGA8IPA6NC78 632 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 GOLGA8JA6NMD2 632 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 FAM228BP0C875 321 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 RSRC2Q7L4I2 434 aaKnown RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 CBWD2Q8IUF1 395 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 FBXO16Q8IX29 292 aaPredicted RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 DHX37Q8IY37 1157 aaKnown RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 ABRAQ8N0Z2 381 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 C2orf69Q8N8R5 385 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 BBXQ8WY36 941 aaPredicted RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 POMGNT1Q8WZA1 660 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 ADAMTS1Q9UHI8 967 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 F8VZ95 297 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 HNRNPDLO14979 420 aaKnown RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 KIAA0391O15091 583 aaKnown RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 MAFO75444 373 aaPredicted RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 CCDC172P0C7W6 258 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 TUBB4BP68371 445 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 TTLL4Q14679 1199 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 DRAP1Q14919 205 aaPredicted RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 ZNF792Q3KQV3 632 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 USP37Q86T82 979 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 VPS36Q86VN1 386 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 EXOC8Q8IYI6 725 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 PDCL2Q8N4E4 241 aa28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 DIS3Q9Y2L1 958 aaKnown RBP28.61■■■□□ 2.17
CCDC88C-205ENST00000553403 NOP56O00567 594 aaKnown RBP28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 PIGRP01833 764 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 GTF2H1P32780 548 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 MXI1P50539 228 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 STRN3Q13033 797 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 HSP90AA2PQ14568 343 aaPredicted RBP28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 ENOX2Q16206 610 aaKnown RBP28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 GPD1LQ8N335 351 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 DEPTORQ8TB45 409 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 PARD3BQ8TEW8 1205 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 GOLGA1Q92805 767 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 SAAL1Q96ER3 474 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 BICD1Q96G01 975 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 ALS2CR12Q96Q35 445 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 KIAA1586Q9HCI6 787 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 STYXL1Q9Y6J8 313 aa28.6■■■□□ 2.17
CCDC88C-205ENST00000553403 GAS2O43903 313 aaKnown RBP28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 ATP1A1P05023 1023 aaKnown RBP28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 GCLMP48507 274 aa28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 SCFD2Q8WU76 684 aa28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 TMEM117Q9H0C3 514 aa28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 TMEM134Q9H6X4 195 aa28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 JRKLQ9Y4A0 524 aa28.59■■■□□ 2.17
CCDC88C-205ENST00000553403 STRNO43815 780 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 ZBTB48P10074 688 aaPredicted RBP28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 TXNP10599 105 aaKnown RBP28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 SLC26A2P50443 739 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 CYP24A1Q07973 514 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 HSDL1Q3SXM5 330 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 ANKRD13CQ8N6S4 541 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 ATP8B4Q8TF62 1192 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 GLG1Q92896 1179 aa28.58■■■□□ 2.17
CCDC88C-205ENST00000553403 SPATA33Q96N06 139 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms