RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 SRGNP10124 158 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 PTGS1P23219 599 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 MC4RP32245 332 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 MAPK9P45984 424 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 NRG3P56975 720 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 MGAT2Q10469 447 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 NOLC1Q14978 699 aaKnown RBP eCLIP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 TMC6Q7Z403 805 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 CLASRPQ8N2M8 674 aaKnown RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 GLB1L3Q8NCI6 653 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 ARRDC4Q8NCT1 418 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 C3orf20Q8ND61 904 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 BRI3BPQ8WY22 251 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 LTV1Q96GA3 475 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 HIST1H2AHQ96KK5 128 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 FAM167AQ96KS9 214 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 HIST1H2AJQ99878 128 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 NOL10Q9BSC4 688 aaKnown RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 UNKQ9C0B0 810 aaKnown RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 ARMT1Q9H993 441 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 CARS2Q9HA77 564 aaKnown RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 ZNF287Q9HBT7 754 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 RBM12Q9NTZ6 932 aaKnown RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 FTSJ1Q9UET6 329 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 EVLQ9UI08 416 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 SCOCQ9UIL1 159 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 OGDHLQ9ULD0 1010 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 SYNPO2Q9UMS6 1093 aa6.95□□□□□ -1.3
SCFD1-208ENST00000553278 MAGED2Q9UNF1 606 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-208ENST00000553278 A0A1W2PPL8 197 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 POM121BA6NF01 834 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 H3BUI4 141 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 DDX3XO00571 662 aaKnown RBP eCLIP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 NFIBO00712 420 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 ARIH2O95376 493 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 IGLV1-40P01703 118 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 HK3P52790 923 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 GEMIN4P57678 1058 aaKnown RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 PPFIA1Q13136 1202 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 NOGQ13253 232 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 STARD3Q14849 445 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 GJC2Q5T442 439 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 LVRNQ6Q4G3 990 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 SYDE1Q6ZW31 735 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 COL23A1Q86Y22 540 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 ANKRD18AQ8IVF6 992 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 GLB1L2Q8IW92 636 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 SYTL1Q8IYJ3 562 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 PLBD2Q8NHP8 589 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 NSUN6Q8TEA1 469 aaKnown RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 MISP3Q96FF7 219 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 TMEM41AQ96HV5 264 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 NT5C1BQ96P26 610 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 ALPK1Q96QP1 1244 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 PAGR1Q9BTK6 254 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 PITHD1Q9GZP4 211 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 ZMAT3Q9HA38 289 aaKnown RBP6.94□□□□□ -1.3
SCFD1-208ENST00000553278 ATP6V0A4Q9HBG4 840 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 TMEM59LQ9UK28 342 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 ADAMTS8Q9UP79 889 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 WASF3Q9UPY6 502 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 PCDHGB2Q9Y5G2 931 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 PCDHA13Q9Y5I0 950 aa6.94□□□□□ -1.3
SCFD1-208ENST00000553278 A0A0A6YYJ9 748 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 ISM1B1AKI9 464 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 SGTAO43765 313 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 FGF18O76093 207 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 ZBTB7AO95365 584 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 MPIG6BO95866 241 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 IGHA1P01876 353 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 FUT4P22083 530 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 ARL4AP40617 200 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 TBX2Q13207 712 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-208ENST00000553278 SIM2Q14190 667 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-208ENST00000553278 NOMO1Q15155 1222 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 RALGPS1Q5JS13 557 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 GAREM2Q75VX8 874 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 CCDC33Q8N5R6 958 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 IL31RAQ8NI17 732 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 WDR48Q8TAF3 677 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 ANKS1AQ92625 1134 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 SKA1Q96BD8 255 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 SLC35A4Q96G79 324 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 PLCD4Q9BRC7 762 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 INCENPQ9NQS7 918 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 LMBRD1Q9NUN5 540 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 PIM2Q9P1W9 311 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 STAP2Q9UGK3 403 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 CEP83Q9Y592 693 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 PCDHB1Q9Y5F3 818 aa6.93□□□□□ -1.3
SCFD1-208ENST00000553278 FITM1A5D6W6 292 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 EPB41L2O43491 1005 aaKnown RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 IL18RAPO95256 599 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 AGR2O95994 175 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 TSHRP16473 764 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 APEX1P27695 318 aaKnown RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 SLC7A1P30825 629 aa6.92□□□□□ -1.3
SCFD1-208ENST00000553278 NKX6-1P78426 367 aaPredicted RBP6.92□□□□□ -1.3
SCFD1-208ENST00000553278 PPP3CAQ08209 521 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms