RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RUFY4Q6ZNE9 571 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 MMS22LQ6ZRQ5 1243 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 RPUSD2Q8IZ73 545 aaKnown RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 IL31RAQ8NI17 732 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 FAM84AQ96KN4 292 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 NACC1Q96RE7 527 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 PCDHB18PQ96TA0 734 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ERP44Q9BS26 406 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 TXLNGYQ9BZA5 131 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 CARD9Q9H257 536 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 FAM114A2Q9NRY5 505 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 COL20A1Q9P218 1284 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 DDX20Q9UHI6 824 aaKnown RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 PNMA2Q9UL42 364 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 TTC7AQ9ULT0 858 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 SCAF8Q9UPN6 1271 aaKnown RBP8.1□□□□□ -1.11
LIMA1-213ENST00000552720 DAAM1Q9Y4D1 1078 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ATP8B3O60423 1300 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 TLDC2A0PJX2 215 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ARHGEF35A5YM69 484 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ANKRD62A6NC57 917 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 GOLGA8IPA6NC78 632 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 GOLGA8JA6NMD2 632 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 YDJCA8MPS7 323 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ANKRD63C9JTQ0 380 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 H0YHG0 523 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 PPFIA2O75334 1257 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 SGPL1O95470 568 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 CALCAP01258 141 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ITGB5P18084 799 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 PDE6BP35913 854 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 IFFO1Q0D2I5 559 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 MESDQ14696 234 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 PADI6Q6TGC4 694 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 C6orf89Q6UWU4 347 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 MIGA2Q7L4E1 593 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 JAMLQ86YT9 394 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 CNPY4Q8N129 248 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 STRA6Q9BX79 667 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 WDR11Q9BZH6 1224 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 GPRC5CQ9NQ84 441 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 SERPINA10Q9UK55 444 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 STK24Q9Y6E0 443 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 ATRNL1Q5VV63 1379 aa8.1□□□□□ -1.11
LIMA1-213ENST00000552720 KIAA0391O15091 583 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 ATP2C2O75185 946 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 VIL1P09327 827 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 COMTP21964 271 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PTGIRP43119 386 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 RPL21P46778 160 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 KCNJ1P48048 391 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 GTF2A1P52655 376 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 BIRC3Q13489 604 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 DGKZQ13574 1117 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 MTMR3Q13615 1198 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PPP2R5AQ15172 486 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 AGBL2Q5U5Z8 902 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 B3GNT9Q6UX72 402 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 NOP9Q86U38 636 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 ARFGAP2Q8N6H7 521 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PRELID2Q8N945 189 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PRPF38AQ8NAV1 312 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 AGBL1Q96MI9 1066 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PSMD1Q99460 953 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PAGR1Q9BTK6 254 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 OSBPL7Q9BZF2 842 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 RAB17Q9H0T7 212 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 KIAA1217Q5T5P2 1943 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 FSBPO95073 299 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PYGMP11217 842 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 CHRNB2P17787 502 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 FGFR4P22455 802 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 SLCO1A2P46721 670 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 VAMP7P51809 220 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PMS2P54278 862 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 IFI35P80217 286 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 SPP2Q13103 211 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 SLC29A2Q14542 456 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 NSMFQ6X4W1 530 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 SLC47A2Q86VL8 602 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 CCDC13Q8IYE1 715 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 NLGN1Q8N2Q7 840 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 POP1Q99575 1024 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 MRIQ9BWK5 157 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 TEKT3Q9BXF9 490 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 RANBP17Q9H2T7 1088 aaKnown RBP8.09□□□□□ -1.11
LIMA1-213ENST00000552720 SEMA4AQ9H3S1 761 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 GRHL1Q9NZI5 618 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 SEL1LQ9UBV2 794 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 ODF2LQ9ULJ1 636 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 PTPN22Q9Y2R2 807 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 TMX2Q9Y320 296 aa8.09□□□□□ -1.11
LIMA1-213ENST00000552720 RPTORQ8N122 1335 aa8.09□□□□□ -1.12
LIMA1-213ENST00000552720 ATXN2Q99700 1313 aaKnown RBP8.09□□□□□ -1.12
LIMA1-213ENST00000552720 DNM1LO00429 736 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 NFIBO00712 420 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 CYP26A1O43174 497 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ENTPD3O75355 529 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ADRB2P07550 413 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 MMEP08473 750 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms