RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 FAM105AQ9NUU6 356 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 PIN4Q9Y237 131 aaKnown RBP16.34■□□□□ 0.21
VPS29-209ENST00000551655 RALGAPA1Q6GYQ0 2036 aa16.34■□□□□ 0.21
VPS29-209ENST00000551655 FAM86B1E9PN63 330 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 MAGEB2O15479 319 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 FAM86B2P0C5J1 330 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 NCLP19338 710 aaKnown RBP16.33■□□□□ 0.2
VPS29-209ENST00000551655 FSHRP23945 695 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 PRKCQQ04759 706 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 ZBTB41Q5SVQ8 909 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 AGMOQ6ZNB7 445 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 PRR23CQ6ZRP0 262 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 PRR23BQ6ZRT6 265 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 TPRG1Q6ZUI0 275 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 KXD1Q9BQD3 176 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 FAN1Q9Y2M0 1017 aa16.33■□□□□ 0.2
VPS29-209ENST00000551655 TGM5O43548 720 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 ZNF862O60290 1169 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 DDAH1O94760 285 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 POMCP01189 267 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 TDGF1P13385 188 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 TMOD1P28289 359 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 GLUD2P49448 558 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 FZD5Q13467 585 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 SART3Q15020 963 aaKnown RBP16.32■□□□□ 0.2
VPS29-209ENST00000551655 LAIR1Q6GTX8 287 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 GRASPQ7Z6J2 395 aaPredicted RBP16.32■□□□□ 0.2
VPS29-209ENST00000551655 RALYLQ86SE5 291 aaKnown RBP16.32■□□□□ 0.2
VPS29-209ENST00000551655 PLA2G4DQ86XP0 818 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 CLDN23Q96B33 292 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 OSBPL6Q9BZF3 934 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 PRKD2Q9BZL6 878 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 RXFP1Q9HBX9 757 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 FAM217BQ9NTX9 383 aaPredicted RBP16.32■□□□□ 0.2
VPS29-209ENST00000551655 RAB23Q9ULC3 237 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 CEP131Q9UPN4 1083 aa16.32■□□□□ 0.2
VPS29-209ENST00000551655 SETXQ7Z333 2677 aaKnown RBP16.31■□□□□ 0.2
VPS29-209ENST00000551655 A0A087WZ62 844 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 CARNS1A5YM72 827 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 C1QTNF9BB2RNN3 333 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 E7EWF7 191 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 GAS2O43903 313 aaKnown RBP16.31■□□□□ 0.2
VPS29-209ENST00000551655 PAPLNO95428 1278 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 ALDH2P05091 517 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 C1QTNF9P0C862 333 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 RPL17P18621 184 aaKnown RBP16.31■□□□□ 0.2
VPS29-209ENST00000551655 SMARCA1P28370 1054 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 ZNF76P36508 570 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 SRSF5Q13243 272 aaKnown RBP16.31■□□□□ 0.2
VPS29-209ENST00000551655 WWC2Q6AWC2 1192 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 FDXACB1Q9BRP7 624 aaPredicted RBP16.31■□□□□ 0.2
VPS29-209ENST00000551655 TRAIPQ9BWF2 469 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 CHST12Q9NRB3 414 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 CDH7Q9ULB5 785 aa16.31■□□□□ 0.2
VPS29-209ENST00000551655 WDFY3Q8IZQ1 3526 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 IGLV3-22A0A075B6J6 115 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 SHISA7A6NL88 538 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 IPO5O00410 1097 aaKnown RBP16.3■□□□□ 0.2
VPS29-209ENST00000551655 PROS1P07225 676 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 RETP07949 1114 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 MAGEA9P43362 315 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 PTH1RQ03431 593 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 UGCGQ16739 394 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 ELMSAN1Q6PJG2 1045 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 MB21D2Q8IYB1 491 aaPredicted RBP16.3■□□□□ 0.2
VPS29-209ENST00000551655 RNF168Q8IYW5 571 aaPredicted RBP16.3■□□□□ 0.2
VPS29-209ENST00000551655 NCOA7Q8NI08 942 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 ITFG1Q8TB96 612 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 URGCPQ8TCY9 931 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 FAM193BQ96PV7 902 aaPredicted RBP16.3■□□□□ 0.2
VPS29-209ENST00000551655 MAP3K14Q99558 947 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 LZTS2Q9BRK4 669 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 TMEM175Q9BSA9 504 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 GCOM2Q9BZD3 368 aaPredicted RBP16.3■□□□□ 0.2
VPS29-209ENST00000551655 ZDHHC7Q9NXF8 308 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 DPP7Q9UHL4 492 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 ZMIZ1Q9ULJ6 1067 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 PCDHB2Q9Y5E7 798 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 IGF2RP11717 2491 aa16.3■□□□□ 0.2
VPS29-209ENST00000551655 TMEM150BA6NC51 233 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 EFEMP2O95967 443 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 OATP04181 439 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 PSAPP07602 524 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 SREBF1P36956 1147 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 OR1G1P47890 313 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 SHC2P98077 582 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 PLEKHM2Q8IWE5 1019 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 FGF13Q92913 245 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 COL26A1Q96A83 441 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 SH2D3AQ9BRG2 576 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 ZNF577Q9BSK1 485 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 PLEKHA4Q9H4M7 779 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 RSAD1Q9HA92 442 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 HEBP1Q9NRV9 189 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 NBEAQ8NFP9 2946 aa16.29■□□□□ 0.2
VPS29-209ENST00000551655 ADAMTS3O15072 1205 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 ZNF623O75123 536 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 ZMYND10O75800 440 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 SKIP12755 728 aa16.28■□□□□ 0.2
VPS29-209ENST00000551655 SFPQP23246 707 aaKnown RBP eCLIP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms