RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 TAB3Q8N5C8 712 aaPredicted RBP3.12□□□□□ -1.91
PTCH1-223ENST00000551623 SUPT20HQ8NEM7 779 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 RNF34Q969K3 372 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 AJUBAQ96IF1 538 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 GDF15Q99988 308 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 R3HDMLQ9H3Y0 253 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF408Q9H9D4 720 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 CNOT7Q9UIV1 285 aaKnown RBP3.12□□□□□ -1.91
PTCH1-223ENST00000551623 WASF3Q9UPY6 502 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF652Q9Y2D9 606 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 ATP6V0A2Q9Y487 856 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 SLC30A1Q9Y6M5 507 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 CENPFP49454 3210 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF646O15015 1829 aaPredicted RBP3.12□□□□□ -1.91
PTCH1-223ENST00000551623 ABCC12Q96J65 1359 aa3.12□□□□□ -1.91
PTCH1-223ENST00000551623 COL3A1P02461 1466 aaPredicted RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 LRRC37AA6NMS7 1700 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 YDJCA8MPS7 323 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 ADM5C9JUS6 153 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 H7C1D1 291 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 PPIP5K2O43314 1243 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 CANXP27824 592 aaKnown RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF280AP59817 542 aaPredicted RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 FANCCQ00597 558 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 AMPD2Q01433 879 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 C1orf141Q5JVX7 400 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 TMC5Q6UXY8 1006 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 DLK2Q6UY11 383 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 HS2ST1Q7LGA3 356 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 DEFB123Q8N688 67 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 DCPSQ96C86 337 aaKnown RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 CDCA5Q96FF9 252 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF764Q96H86 408 aaPredicted RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 ERO1AQ96HE7 468 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 SNX27Q96L92 541 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 MMP19Q99542 508 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 BCL2L13Q9BXK5 485 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF703Q9H7S9 590 aaPredicted RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 CLEC1BQ9P126 229 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 PTGFRNQ9P2B2 879 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 PPT2Q9UMR5 302 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 REXO2Q9Y3B8 237 aaKnown RBP3.11□□□□□ -1.91
PTCH1-223ENST00000551623 TRIM17Q9Y577 477 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 CEMIPQ8WUJ3 1361 aa3.11□□□□□ -1.91
PTCH1-223ENST00000551623 LAMB4A4D0S4 1761 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 SHTN1A0MZ66 631 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 RNMTO43148 476 aaKnown RBP3.1□□□□□ -1.91
PTCH1-223ENST00000551623 LRG1P02750 347 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 ZBTB48P10074 688 aaPredicted RBP3.1□□□□□ -1.91
PTCH1-223ENST00000551623 PDIA4P13667 645 aaKnown RBP3.1□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF16P17020 682 aaPredicted RBP3.1□□□□□ -1.91
PTCH1-223ENST00000551623 FPR2P25090 351 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 DNAJA1P31689 397 aaKnown RBP3.1□□□□□ -1.91
PTCH1-223ENST00000551623 RAC3P60763 192 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF568Q3ZCX4 644 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF790Q6PG37 636 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 UNC5AQ6ZN44 842 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF808Q8N4W9 903 aaPredicted RBP3.1□□□□□ -1.91
PTCH1-223ENST00000551623 ARRDC4Q8NCT1 418 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 SPON2Q9BUD6 331 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 HTATIP2Q9BUP3 242 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 CARD11Q9BXL7 1154 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 SLC2A4RGQ9NR83 387 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 GGA3Q9NZ52 723 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 NR2E3Q9Y5X4 410 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 BDP1A6H8Y1 2624 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 RPTORQ8N122 1335 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 RTL9Q8NET4 1388 aa3.1□□□□□ -1.91
PTCH1-223ENST00000551623 COL1A1P02452 1464 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 PRUNE2Q8WUY3 3088 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 PRAMEF22A3QJZ6 481 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 TMEM191CA6NGB0 347 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 MANSC4A6NHS7 340 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 ERVV-1B6SEH8 477 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 INO80B-WBP1J3KQ70 363 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 MASP2O00187 686 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 BBOX1O75936 387 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 GJB1P08034 283 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 VIL1P09327 827 aaKnown RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 PLS3P13797 630 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 CR2P20023 1033 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 GJA8P48165 433 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 PRMT2P55345 433 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 C21orf58P58505 322 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 GRB10Q13322 594 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 SLC39A6Q13433 755 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 SMAD2Q15796 467 aaKnown RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 SLC9C1Q4G0N8 1177 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 SLC10A5Q5PT55 438 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 CCDC81Q6ZN84 652 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 KIAA0825Q8IV33 1275 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 REXO1L1PQ8IX06 675 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 Q8N1Y9 231 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 ZNF513Q8N8E2 541 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 TMEM87AQ8NBN3 555 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 NTN5Q8WTR8 489 aaPredicted RBP3.09□□□□□ -1.91
PTCH1-223ENST00000551623 FAM122AQ96E09 287 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 GUCD1Q96NT3 240 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 OR14A2Q96R54 314 aa3.09□□□□□ -1.91
PTCH1-223ENST00000551623 GMLQ99445 158 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms