RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 PIN4Q9Y237 131 aaKnown RBP15.16■□□□□ 0.02
PTCH1-213ENST00000546820 PCDHB13Q9Y5F0 798 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 MYH11P35749 1972 aa15.16■□□□□ 0.02
PTCH1-213ENST00000546820 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 STAG3L1P0CL83 205 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 ATP2A2P16615 1042 aaKnown RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 WDR5P61964 334 aaKnown RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 DSC3Q14574 896 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 TCTN1Q2MV58 587 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 TWF2Q6IBS0 349 aaKnown RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 STXBP4Q6ZWJ1 553 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 UNC13DQ70J99 1090 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 RTN4RL1Q86UN2 441 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 ELOA2Q8IYF1 753 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 TMEM161BQ8NDZ6 487 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 CCDC51Q96ER9 411 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 KIFC3Q9BVG8 833 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 MRPL4Q9BYD3 311 aaKnown RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 BLZF1Q9H2G9 400 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 ST6GALNAC4Q9H4F1 302 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 OLFML3Q9NRN5 406 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 CXXC1Q9P0U4 656 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-213ENST00000546820 LRFN2Q9ULH4 789 aa15.15■□□□□ 0.02
PTCH1-213ENST00000546820 FRMD3A2A2Y4 597 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 K7ENM7 598 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 TSPAN1O60635 241 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 NR1I2O75469 434 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 SARSP49591 514 aaKnown RBP15.14■□□□□ 0.01
PTCH1-213ENST00000546820 PSMD2Q13200 908 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 CUL4BQ13620 913 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 ALCAMQ13740 583 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.14■□□□□ 0.01
PTCH1-213ENST00000546820 ZNF720Q7Z2F6 126 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 SFR1Q86XK3 245 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 GRAMD1CQ8IYS0 662 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 MYOCDQ8IZQ8 938 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 KCNN1Q92952 543 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 TOP1MTQ969P6 601 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 ADPGKQ9BRR6 497 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 ZBED2Q9BTP6 218 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 TRAIPQ9BWF2 469 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 CCDC113Q9H0I3 377 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 TBX20Q9UMR3 447 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 PCDHB7Q9Y5E2 793 aa15.14■□□□□ 0.01
PTCH1-213ENST00000546820 SIP14410 1827 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 A0A0U1RQF3 1178 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 A0A1B0GUA9 196 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.13■□□□□ 0.01
PTCH1-213ENST00000546820 N4BP3O15049 544 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 MGEA5O60502 916 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 SMC2O95347 1197 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 GCNT3O95395 438 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 EOMESO95936 686 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 ARF4P18085 180 aaPredicted RBP15.13■□□□□ 0.01
PTCH1-213ENST00000546820 NMT1P30419 496 aaKnown RBP15.13■□□□□ 0.01
PTCH1-213ENST00000546820 HOXA11P31270 313 aaPredicted RBP15.13■□□□□ 0.01
PTCH1-213ENST00000546820 RAB27AP51159 221 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 FAM189BP81408 668 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 GTF2BQ00403 316 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 COASYQ13057 564 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 POSTNQ15063 836 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 AMHR2Q16671 573 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 SLC27A1Q6PCB7 646 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 HVCN1Q96D96 273 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 PGBD4Q96DM1 585 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 CPB2Q96IY4 423 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 TRIM6Q9C030 488 aaPredicted RBP15.13■□□□□ 0.01
PTCH1-213ENST00000546820 ELAC1Q9H777 363 aaKnown RBP15.13■□□□□ 0.01
PTCH1-213ENST00000546820 LMBRD1Q9NUN5 540 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 EXOC1Q9NV70 894 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 TBC1D7Q9P0N9 293 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 EXOC7Q9UPT5 735 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 ADGRA3Q8IWK6 1321 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 CNTNAP2Q9UHC6 1331 aa15.13■□□□□ 0.01
PTCH1-213ENST00000546820 C9IYK1 514 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 UPP2O95045 317 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 RPN1P04843 607 aaKnown RBP15.12■□□□□ 0.01
PTCH1-213ENST00000546820 CASP1P29466 404 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 ATF7IP2Q5U623 682 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 NPAS4Q8IUM7 802 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 HERC6Q8IVU3 1022 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 HACE1Q8IYU2 909 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 BICD1Q96G01 975 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 TCHPQ9BT92 498 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 RMND1Q9NWS8 449 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 TMEM161AQ9NX61 479 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 TNFSF13BQ9Y275 285 aa15.12■□□□□ 0.01
PTCH1-213ENST00000546820 B4GALT5O43286 388 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 HOXA2O43364 376 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 ZNF623O75123 536 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 IBSPP21815 317 aaPredicted RBP15.11■□□□□ 0.01
PTCH1-213ENST00000546820 DEFB103AP81534 67 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 DPYDQ12882 1025 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 LRIT3Q3SXY7 679 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 FAM26FQ5R3K3 315 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 NT5DC1Q5TFE4 455 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 ZPBP2Q6X784 338 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 ECHDC2Q86YB7 292 aa15.11■□□□□ 0.01
PTCH1-213ENST00000546820 LINC01599Q8WXQ3 324 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms