RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 EPHA7Q15375 998 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 TWF2Q6IBS0 349 aaKnown RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 PPP4R3AQ6IN85 833 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 MAMSTRQ6ZN01 415 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 TRIM67Q6ZTA4 783 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 PIK3AP1Q6ZUJ8 805 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 CATSPER4Q7RTX7 472 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 NEK8Q86SG6 692 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 ALYREFQ86V81 257 aaKnown RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 TMEM173Q86WV6 379 aaPredicted RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 FAM20AQ96MK3 541 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 MRPL9Q9BYD2 267 aaKnown RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 INO80BQ9C086 356 aaPredicted RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 NRDE2Q9H7Z3 1164 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 IFT122Q9HBG6 1241 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 SCUBE2Q9NQ36 999 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 FAM105AQ9NUU6 356 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 RGL1Q9NZL6 768 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 CDH22Q9UJ99 828 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 PIN4Q9Y237 131 aaKnown RBP9.48□□□□□ -0.89
USP28-215ENST00000545608 HCFC2Q9Y5Z7 792 aa9.48□□□□□ -0.89
USP28-215ENST00000545608 MUC6Q6W4X9 2439 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 TECTAO75443 2155 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 FAM205CA6NFA0 338 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 TMEM221A6NGB7 291 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 M0R296 226 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 ZBTB39O15060 712 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 B4GALT3O60512 393 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 CCNT1O60563 726 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 CLASP2O75122 1294 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 ZNF623O75123 536 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 ZC3H11AO75152 810 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP28-215ENST00000545608 OFD1O75665 1012 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 CDKL5O76039 1030 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 CXCL14O95715 111 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 GALTP07902 379 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 FDPSP14324 419 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 GCFC2P16383 781 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 HOXB8P17481 243 aaPredicted RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 ALDH7A1P49419 539 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 SMC1AQ14683 1233 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 NOMO2Q5JPE7 1267 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 AGMOQ6ZNB7 445 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 BMP8AQ7Z5Y6 402 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 C4orf19Q8IY42 314 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 VPS52Q8N1B4 723 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 BCL7CQ8WUZ0 217 aaPredicted RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 PRPF31Q8WWY3 499 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 AUTS2Q8WXX7 1259 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 CASP10Q92851 521 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 TMEM143Q96AN5 459 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 DYDC2Q96IM9 177 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 CEP170P1Q96L14 293 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 MFSD14AQ96MC6 490 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 JPH2Q9BR39 696 aaPredicted RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 DHX33Q9H6R0 707 aaKnown RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 MINDY3Q9H8M7 445 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 TBC1D13Q9NVG8 400 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 ORC3Q9UBD5 711 aaPredicted RBP9.47□□□□□ -0.89
USP28-215ENST00000545608 INPP5FQ9Y2H2 1132 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 COL4A3BPQ9Y5P4 624 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 STK36Q9NRP7 1315 aa9.47□□□□□ -0.89
USP28-215ENST00000545608 TBX3O15119 743 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 MARCH6O60337 910 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 DKC1O60832 514 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP28-215ENST00000545608 SRGAP2CP0DJJ0 459 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SRGAP2BP0DMP2 458 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SKIP12755 728 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 XBP1P17861 261 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SP100P23497 879 aaPredicted RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 HOXA11P31270 313 aaPredicted RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 YWHABP31946 246 aaKnown RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 CA8P35219 290 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SLC11A1P49279 550 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 AFF1P51825 1210 aaKnown RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 POLGP54098 1239 aaPredicted RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 AK2P54819 239 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 NHLH1Q02575 133 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SPIRE1Q08AE8 756 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 NR5A1Q13285 461 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 CTTNQ14247 550 aaKnown RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 UBXN11Q5T124 520 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 NCAPH2Q6IBW4 605 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 KANK3Q6NY19 840 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 GLB1LQ6UWU2 654 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SRGAP1Q7Z6B7 1085 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 MRPL10Q7Z7H8 261 aaKnown RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 ZNF280BQ86YH2 543 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 C12orf76Q8N812 135 aaPredicted RBP9.46□□□□□ -0.9
USP28-215ENST00000545608 NECAB1Q8N987 351 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 SLC7A3Q8WY07 619 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 PBXIP1Q96AQ6 731 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 TMEM169Q96HH4 297 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 IGSF21Q96ID5 467 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 LXNQ9BS40 222 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 GBP3Q9H0R5 595 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 ZBP1Q9H171 429 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 KCNH6Q9H252 994 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 AGPAT5Q9NUQ2 364 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 DNAJB4Q9UDY4 337 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms