RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 TMEM247A6NEH6 219 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 KLRC4O43908 158 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 AKR1B10O60218 316 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 SKIP12755 728 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 CHN1P15882 459 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 CYLC1P35663 651 aaPredicted RBP12.12□□□□□ -0.47
CDH4-201ENST00000543233 BIRC3Q13489 604 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 ITIH4Q14624 930 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 USH1GQ495M9 461 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 ZC2HC1CQ53FD0 456 aaPredicted RBP12.12□□□□□ -0.47
CDH4-201ENST00000543233 ARHGAP27Q6ZUM4 889 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 DEFB132Q7Z7B7 95 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 SCUBE1Q8IWY4 988 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 CASKIN2Q8WXE0 1202 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 LZICQ8WZA0 190 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 PTPRN2Q92932 1015 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 DNAJC1Q96KC8 554 aaKnown RBP12.12□□□□□ -0.47
CDH4-201ENST00000543233 TRIM9Q9C026 710 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 KANSL2Q9H9L4 492 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 PNMA2Q9UL42 364 aa12.12□□□□□ -0.47
CDH4-201ENST00000543233 MOCS3O95396 460 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 HDAC4P56524 1084 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ZNF844Q08AG5 666 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ITGA7Q13683 1181 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 SMUG1Q53HV7 270 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ANKRD40Q6AI12 368 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 EXOC8Q8IYI6 725 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 RUBCNQ92622 972 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 LENG1Q96BZ8 264 aaPredicted RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 RAB3IPQ96QF0 476 aaPredicted RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 FAM129AQ9BZQ8 928 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 MLXIPQ9HAP2 919 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 RABL2AQ9UBK7 228 aaPredicted RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 CCDC88AQ3V6T2 1871 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 NPHP3-ACAD11A0A0J9YXS1 232 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 MAGEA13PA6NCF6 341 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 RGL2O15211 777 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 TROVE2P10155 538 aaKnown RBP eCLIP12.11□□□□□ -0.47
CDH4-201ENST00000543233 CHRNA5P30532 468 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 PBX1P40424 430 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 GALK1P51570 392 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 CCNG1P51959 295 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 MTTPP55157 894 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 LMBRD2Q68DH5 695 aaPredicted RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 UHMK1Q8TAS1 419 aaKnown RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 NEK9Q8TD19 979 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 STK32AQ8WU08 396 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 PYM1Q9BRP8 204 aaKnown RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 JMJD4Q9H9V9 463 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 AGPAT5Q9NUQ2 364 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 TSC22D4Q9Y3Q8 395 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ATP6V0A2Q9Y487 856 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 HYOU1Q9Y4L1 999 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ROBO3Q96MS0 1386 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 A0A0J9YVX5 310 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 CCDC160A6NGH7 325 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 PPP1R11O60927 126 aaPredicted RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 TTLL1O95922 423 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ITGA2BP08514 1039 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 SRGNP10124 158 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 YY1P25490 414 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 PSMD7P51665 324 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 ZNF131P52739 623 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 SPAG1Q07617 926 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 DUS1LQ6P1R4 473 aaKnown RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 KCNK18Q7Z418 384 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 SESTD1Q86VW0 696 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 SP8Q8IXZ3 490 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 CYP4X1Q8N118 509 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 NMD3Q96D46 503 aaKnown RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 SRPK1Q96SB4 655 aaKnown RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 TUBGCP2Q9BSJ2 902 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 COA1Q9GZY4 146 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 KBTBD4Q9NVX7 518 aa12.11□□□□□ -0.47
CDH4-201ENST00000543233 LIMA1Q9UHB6 759 aaKnown RBP12.11□□□□□ -0.47
CDH4-201ENST00000543233 HLA-DOAP06340 250 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 SHMT1P34896 483 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 ADARP55265 1226 aaKnown RBP12.1□□□□□ -0.47
CDH4-201ENST00000543233 RCN1Q15293 331 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 SLC30A10Q6XR72 485 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 CEP70Q8NHQ1 597 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 TAF4BQ92750 862 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 MPP4Q96JB8 637 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 CNOT6LQ96LI5 555 aaKnown RBP12.1□□□□□ -0.47
CDH4-201ENST00000543233 CRAMP1Q96RY5 1269 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 PRMT1Q99873 361 aaKnown RBP12.1□□□□□ -0.47
CDH4-201ENST00000543233 CCSER1Q9C0I3 900 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 TMA7Q9Y2S6 64 aaKnown RBP12.1□□□□□ -0.47
CDH4-201ENST00000543233 CAPN6Q9Y6Q1 641 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 GAKO14976 1311 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 CASZ1Q86V15 1759 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 FAM170AA1A519 330 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 H7C1D1 291 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 SPA17Q15506 151 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 SV2BQ7L1I2 683 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 SUPT20HQ8NEM7 779 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 MGARPQ8TDB4 240 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 PIGOQ8TEQ8 1089 aa12.1□□□□□ -0.47
CDH4-201ENST00000543233 NOC4LQ9BVI4 516 aaKnown RBP12.1□□□□□ -0.47
CDH4-201ENST00000543233 TANGO6Q9C0B7 1094 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms