RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ARID5AQ03989 594 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 PPATQ06203 517 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 SPP2Q13103 211 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 CUL1Q13616 776 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 BRDTQ58F21 947 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 NBPF12Q5TAG4 269 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 ANKRD13CQ8N6S4 541 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 TMEM161BQ8NDZ6 487 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 MFSD14AQ96MC6 490 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.69□□□□□ -0.7
SS18-205ENST00000542420 LRRC1Q9BTT6 524 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 PACSIN1Q9BY11 444 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 ISCUQ9H1K1 167 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 TMEM8AQ9HCN3 771 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 AJAP1Q9UKB5 411 aaPredicted RBP10.69□□□□□ -0.7
SS18-205ENST00000542420 AMFRQ9UKV5 643 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 EMSYQ7Z589 1322 aa10.69□□□□□ -0.7
SS18-205ENST00000542420 MIF4GDA9UHW6 222 aaKnown RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 SPATA31C2B4DYI2 1134 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 GOLGA8KD6RF30 607 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 DDX39AO00148 427 aaKnown RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 OPA1O60313 960 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 CCNE2O96020 404 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 MXI1P50539 228 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 GPC3P51654 580 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 GALCP54803 685 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 BAATQ14032 418 aaPredicted RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 XKR9Q5GH70 373 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 PPP1R2P3Q6NXS1 205 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 MIS18BP1Q6P0N0 1132 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 PEX26Q7Z412 305 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 DEFB132Q7Z7B7 95 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 KLRG1Q96E93 195 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 AGPAT1Q99943 283 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 CARD9Q9H257 536 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 RASSF4Q9H2L5 321 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 RBM12Q9NTZ6 932 aaKnown RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 ADAM21Q9UKJ8 722 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 NCK2O43639 380 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 STBD1O95210 358 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 ATG7O95352 703 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 PIGRP01833 764 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 MYCNP04198 464 aaPredicted RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 MYCLP12524 364 aaPredicted RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 COPB2P35606 906 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 XKR3Q5GH77 459 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 SPDYCQ5MJ68 293 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 KRT39Q6A163 491 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 SNRNP48Q6IEG0 339 aaKnown RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 NT5DC3Q86UY8 548 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 CD302Q8IX05 232 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 DHX37Q8IY37 1157 aaKnown RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 EFCAB13Q8IY85 973 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 U2AF1L4Q8WU68 220 aaKnown RBP10.68□□□□□ -0.7
SS18-205ENST00000542420 WRNIP1Q96S55 665 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 SH3GL2Q99962 352 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 SGIP1Q9BQI5 828 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 BCAS3Q9H6U6 928 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 CYP39A1Q9NYL5 469 aa10.68□□□□□ -0.7
SS18-205ENST00000542420 GGPS1O95749 300 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 FTCDO95954 541 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 TNNT3P45378 269 aaPredicted RBP10.67□□□□□ -0.7
SS18-205ENST00000542420 MFAP3P55082 362 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 UGCGQ16739 394 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 C1orf220Q5T0J3 134 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 PHLDB3Q6NSJ2 640 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 ABHD15Q6UXT9 468 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 NSMFQ6X4W1 530 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 FAM71AQ8IYT1 594 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 RPS6KC1Q96S38 1066 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 ATP6V0A4Q9HBG4 840 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 JPH1Q9HDC5 661 aaPredicted RBP10.67□□□□□ -0.7
SS18-205ENST00000542420 KMT5AQ9NQR1 393 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.67□□□□□ -0.7
SS18-205ENST00000542420 SLC9A2Q9UBY0 812 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 DMGDHQ9UI17 866 aaKnown RBP10.67□□□□□ -0.7
SS18-205ENST00000542420 LCMT1Q9UIC8 334 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 AFG3L2Q9Y4W6 797 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 STYXL1Q9Y6J8 313 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 TESPA1A2RU30 521 aaPredicted RBP10.67□□□□□ -0.7
SS18-205ENST00000542420 TRIM66O15016 1216 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 ATP9AO75110 1047 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 RTN2O75298 545 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 TRIM49P0CI25 452 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 TRIM49CP0CI26 452 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 NPTX2P47972 431 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 GYS2P54840 703 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 PEX3P56589 373 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 CLDN10P78369 228 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 ICE2Q659A1 982 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 LBX2Q6XYB7 198 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 ANO5Q75V66 913 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 GPC2Q8N158 579 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 SHC3Q92529 594 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 IFT74Q96LB3 600 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 RUNDC3BQ96NL0 473 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 ARHGAP28Q9P2N2 729 aa10.67□□□□□ -0.7
SS18-205ENST00000542420 POLR2AP24928 1970 aaKnown RBP10.66□□□□□ -0.7
SS18-205ENST00000542420 GOLGA6BA6NDN3 693 aa10.66□□□□□ -0.7
SS18-205ENST00000542420 KCNK3O14649 394 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms