RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CD52P31358 61 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 PPP1R2P41236 205 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 GTF2BQ00403 316 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 MBTD1Q05BQ5 628 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 TPRNQ4KMQ1 711 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 HAUS6Q7Z4H7 955 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 FAM228AQ86W67 206 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 TMEM161BQ8NDZ6 487 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 GUCD1Q96NT3 240 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 ADPGKQ9BRR6 497 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 MRPL4Q9BYD3 311 aaKnown RBP19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 TMEM206Q9H813 350 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 CDHR5Q9HBB8 845 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 AGPAT5Q9NUQ2 364 aa19.27■□□□□ 0.68
CLSTN3-210ENST00000540931 UBE4BO95155 1302 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 NPHP3-ACAD11A0A0J9YXS1 232 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 SFI1A8K8P3 1242 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 K7ENM7 598 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 N4BP3O15049 544 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 EIF3DO15371 548 aaKnown RBP eCLIP19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 AMHP03971 560 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 PRKCBP05771 671 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 STAG3L1P0CL83 205 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 MCM4P33991 863 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 SNRPFP62306 86 aaKnown RBP19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 PRPF4BQ13523 1007 aaKnown RBP19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 TMEM132AQ24JP5 1023 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 ZPBP2Q6X784 338 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 SLC24A5Q71RS6 500 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 ZNF720Q7Z2F6 126 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 TMEM40Q8WWA1 233 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 PPP1R16BQ96T49 567 aa19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 TSPYL2Q9H2G4 693 aaPredicted RBP19.26■□□□□ 0.67
CLSTN3-210ENST00000540931 CNTNAP2Q9UHC6 1331 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 SLC16A4O15374 487 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 HOXA2O43364 376 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 RPN1P04843 607 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 LIG1P18858 919 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 DPYDQ12882 1025 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 COASYQ13057 564 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 CUL4BQ13620 913 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 GPNMBQ14956 572 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 KYAT1Q16773 422 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 SKOR2Q2VWA4 1001 aaPredicted RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 FAM26FQ5R3K3 315 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 TMEM240Q5SV17 173 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 ZNF365Q70YC5 407 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 SFR1Q86XK3 245 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 BSNDQ8WZ55 320 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 STAMQ92783 540 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 SMARCE1Q969G3 411 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 SYAP1Q96A49 352 aaPredicted RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 SLC9A7Q96T83 725 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 CCDC113Q9H0I3 377 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 ELAC1Q9H777 363 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 AGO3Q9H9G7 860 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 RGS18Q9NS28 235 aa19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 CGNQ9P2M7 1197 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 PIN4Q9Y237 131 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-210ENST00000540931 LAMA2P24043 3122 aaKnown RBP19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 A0A1B0GUA9 196 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 RHOBTB3O94955 611 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 EOMESO95936 686 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 CACNB1Q02641 598 aaPredicted RBP19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 SLFN12LQ6IEE8 588 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 SLC27A1Q6PCB7 646 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 PGBD4Q96DM1 585 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 ACCSQ96QU6 501 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 UBN1Q9NPG3 1134 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 TBX20Q9UMR3 447 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 SLC4A7Q9Y6M7 1214 aa19.24■□□□□ 0.67
CLSTN3-210ENST00000540931 CARNS1A5YM72 827 aa19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 KIAA0391O15091 583 aaKnown RBP19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 GCNT3O95395 438 aa19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 DCAF4L1Q3SXM0 396 aa19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 TWF2Q6IBS0 349 aaKnown RBP19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 TRIML1Q8N9V2 468 aa19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.23■□□□□ 0.672e-6■■□□□ 12.8
CLSTN3-210ENST00000540931 TRIM6Q9C030 488 aaPredicted RBP19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 BLZF1Q9H2G9 400 aa19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 TNFSF13BQ9Y275 285 aa19.23■□□□□ 0.67
CLSTN3-210ENST00000540931 A0A0U1RQF3 1178 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ZBBXA8MT70 800 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ENPP3O14638 875 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 TSPAN1O60635 241 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ZNF623O75123 536 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 TOM1L1O75674 476 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 PIGRP01833 764 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ACRP10323 421 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 SARSP49591 514 aaKnown RBP19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 EHHADHQ08426 723 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 DSC3Q14574 896 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 L1TD1Q5T7N2 865 aaKnown RBP19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 NT5DC1Q5TFE4 455 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 MAP4K3Q8IVH8 894 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 SPATA20Q8TB22 786 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 GOLGA5Q8TBA6 731 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 BICD1Q96G01 975 aa19.22■□□□□ 0.67
CLSTN3-210ENST00000540931 ZNF668Q96K58 619 aaPredicted RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms