RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PIP4K2AP48426 406 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 KCNQ4P56696 695 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 UBXN1Q04323 297 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 ITPK1Q13572 414 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 ARL13BQ3SXY8 428 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 PARP10Q53GL7 1025 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 RFWD3Q6PCD5 774 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 INPP5DQ92835 1189 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 GFM2Q969S9 779 aaKnown RBP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 SKA1Q96BD8 255 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 SLC7A6OSQ96CW6 309 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 MAP3K14Q99558 947 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 TCP11L1Q9NUJ3 509 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 TTC7AQ9ULT0 858 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 IVNS1ABPQ9Y6Y0 642 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 SH3PXD2BA1X283 911 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 FAM47E-STBD1D6RA91 191 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 GOLGA8TH3BQL2 631 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 GOLGA8HP0CJ92 632 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 CYP19A1P11511 503 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 DPYDQ12882 1025 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 PDIA6Q15084 440 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 MYLK3Q32MK0 819 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 ANKDD1AQ495B1 522 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 SYCP2LQ5T4T6 812 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 PPP2R2DQ66LE6 453 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 RNF43Q68DV7 783 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 CCDC174Q6PII3 467 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 KLHL7Q8IXQ5 586 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 TRPC4APQ8TEL6 797 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 ITPKCQ96DU7 683 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 MYLK2Q9H1R3 596 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 RNF14Q9UBS8 474 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 CCNL1Q9UK58 526 aaPredicted RBP10.13□□□□□ -0.79
CLIP1-214ENST00000540539 CAPN11Q9UMQ6 739 aa10.13□□□□□ -0.79
CLIP1-214ENST00000540539 UMODL1Q5DID0 1318 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 MAP3K15Q6ZN16 1313 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 CICQ96RK0 1608 aaPredicted RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 TNS1Q9HBL0 1735 aaKnown RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 OPHN1O60890 802 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 APBA3O96018 575 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 CPA3P15088 417 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 CTAG1AP78358 180 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 IFI35P80217 286 aaPredicted RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 CNGA2Q16280 664 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 CNGA3Q16281 694 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 SNRNP48Q6IEG0 339 aaKnown RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 C4orf50Q6ZRC1 276 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 TMC4Q7Z404 712 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 GRAMD2AQ8IUY3 354 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 TTC30BQ8N4P2 665 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 GABPB2Q8TAK5 448 aaPredicted RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 PLEKHO2Q8TD55 490 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 DTX3LQ8TDB6 740 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 FSD1Q9BTV5 496 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 AGXT2Q9BYV1 514 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 FHDC1Q9C0D6 1143 aaPredicted RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 KIAA1683Q9H0B3 1180 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 MTUS1Q9ULD2 1270 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 MYH14Q7Z406 1995 aaKnown RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 NBPF26B4DH59 902 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 STRNO43815 780 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 ATP5HO75947 161 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 DNA2P51530 1060 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 EIF3BP55884 814 aaKnown RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 MAP3K10Q02779 954 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 FLIIQ13045 1269 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 LPIN1Q14693 890 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 TGFBIQ15582 683 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 KCTD19Q17RG1 926 aaPredicted RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 SLC27A3Q5K4L6 730 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 DSTYKQ6XUX3 929 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 UBE2Q1Q7Z7E8 422 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 OSTM1Q86WC4 334 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 VSIG1Q86XK7 387 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 FAM20CQ8IXL6 584 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 GIPC3Q8TF64 312 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 PRPF31Q8WWY3 499 aaKnown RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 ERP27Q96DN0 273 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 PGM2Q96G03 612 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 VPS50Q96JG6 964 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 C2orf49Q9BVC5 232 aaPredicted RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 PLVAPQ9BX97 442 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 IFIH1Q9BYX4 1025 aaKnown RBP10.12□□□□□ -0.79
CLIP1-214ENST00000540539 NDUFA13Q9P0J0 144 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 SALL4Q9UJQ4 1053 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 CTNND2Q9UQB3 1225 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 NUMBLQ9Y6R0 609 aa10.12□□□□□ -0.79
CLIP1-214ENST00000540539 COL5A3P25940 1745 aaPredicted RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 LOC105371267A0A1B0GV96 52 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 PPP1R3GB7ZBB8 358 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TBCAO75347 108 aaKnown RBP10.11□□□□□ -0.79
CLIP1-214ENST00000540539 APOEP02649 317 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 MSL3P1P0C860 447 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 IL4RP24394 825 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 PCSK6P29122 969 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 PRCPP42785 496 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 TUBA1BP68363 451 aa10.11□□□□□ -0.79
CLIP1-214ENST00000540539 NR1D2Q14995 579 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms