RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ATP6V1DQ9Y5K8 247 aa14.01□□□□□ -0.17
CLSTN3-208ENST00000538933 MYH15Q9Y2K3 1946 aa14.01□□□□□ -0.17
CLSTN3-208ENST00000538933 NBEAQ8NFP9 2946 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 NFASCO94856 1347 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 CCDC194A0A1B0GVG4 234 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 F13A1P00488 732 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 ATP4AP20648 1035 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 SDHBP21912 280 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 SLC26A2P50443 739 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 POLGP54098 1239 aaPredicted RBP14□□□□□ -0.17
CLSTN3-208ENST00000538933 ITGB3BPQ13352 177 aaPredicted RBP14□□□□□ -0.17
CLSTN3-208ENST00000538933 VARS2Q5ST30 1063 aaKnown RBP14□□□□□ -0.17
CLSTN3-208ENST00000538933 TYW1BQ6NUM6 668 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 DDX53Q86TM3 631 aaKnown RBP14□□□□□ -0.17
CLSTN3-208ENST00000538933 BCL7CQ8WUZ0 217 aaPredicted RBP14□□□□□ -0.17
CLSTN3-208ENST00000538933 PPP1R16BQ96T49 567 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 ZSCAN16Q9H4T2 348 aaPredicted RBP14□□□□□ -0.17
CLSTN3-208ENST00000538933 ZFYVE26Q68DK2 2539 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 TCHHQ07283 1943 aa14□□□□□ -0.17
CLSTN3-208ENST00000538933 COL1A2P08123 1366 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 FASNP49327 2511 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 DOCK6Q96HP0 2047 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 SPDYE3A6NKU9 549 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 HBP1O60381 514 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 LILRB3O75022 631 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 C22orf31O95567 290 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 CCNE2O96020 404 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 ADRB1P08588 477 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 SRFP11831 508 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 ALDH7A1P49419 539 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 CLCN4P51793 760 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 PKP1Q13835 747 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 GIT2Q14161 759 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 JAKMIP3Q5VZ66 844 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 ABHD15Q6UXT9 468 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 C15orf39Q6ZRI6 1047 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 ABI1Q8IZP0 508 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 DAGLBQ8NCG7 672 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 HELQQ8TDG4 1101 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 GPR152Q8TDT2 470 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 TMEM169Q96HH4 297 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 IGSF21Q96ID5 467 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 ADAMTS10Q9H324 1103 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 FOXP1Q9H334 677 aaPredicted RBP13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 EPS15L1Q9UBC2 864 aa13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 NOL7Q9UMY1 257 aaKnown RBP13.99□□□□□ -0.17
CLSTN3-208ENST00000538933 MTCL1Q9Y4B5 1905 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 A0A0U1RQF3 1178 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 DCDC2BA2VCK2 349 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 BTBD18B2RXH4 712 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 VTNP04004 478 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 CA8P35219 290 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 DDIT3P35638 169 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 BMS1Q14692 1282 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 PTPN14Q15678 1187 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 UBE2SQ16763 222 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 ZNF528Q3MIS6 628 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 ZNF484Q5JVG2 852 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 KRT25Q7Z3Z0 450 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 BRAPQ7Z569 592 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 PPFIBP1Q86W92 1011 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 GPR161Q8N6U8 529 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 BORCS6Q96GS4 357 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 MXRA8Q9BRK3 442 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 RALYQ9UKM9 306 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 CNOT1A5YKK6 2376 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 COL4A3Q01955 1670 aa13.98□□□□□ -0.17
CLSTN3-208ENST00000538933 KINO60870 393 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 LRRN2O75325 713 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 FOSP01100 380 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 CNPP09543 421 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 NCLP19338 710 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 NR5A1Q13285 461 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 AP3B2Q13367 1082 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 NONOQ15233 471 aaKnown RBP eCLIP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 FOXD4L6Q3SYB3 417 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 FOXD4L3Q6VB84 417 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 PIK3AP1Q6ZUJ8 805 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 NOSTRINQ8IVI9 506 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 TEX2Q8IWB9 1127 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 RNF169Q8NCN4 708 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 CMASQ8NFW8 434 aaPredicted RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 PJA1Q8NG27 643 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 OXER1Q8TDS5 423 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 NXPE3Q969Y0 559 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 KLHL5Q96PQ7 755 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 MYADMQ96S97 322 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 RHOBTB2Q9BYZ6 727 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 FOXQ1Q9C009 403 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 AGO4Q9HCK5 861 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 WDR6Q9NNW5 1121 aaKnown RBP13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 PCDHA6Q9UN73 950 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 PCDHA8Q9Y5H6 950 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 LAMA1P25391 3075 aa13.97□□□□□ -0.17
CLSTN3-208ENST00000538933 PRR5-ARHGAP8B1AHC4 643 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 PAPLNO95428 1278 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 GALTP07902 379 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 ZSCAN20P17040 1043 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 EIF4BP23588 611 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 STARD6P59095 220 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms