RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	RBM19	Q9Y4C8	960 aa	Known RBP	13.62	□□□□□ -0.23
CLTCL1-205	ENST00000538828	VPS37C	A5D8V6	355 aa	Predicted RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	VWA3A	A6NCI4	1184 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ACKR2	O00590	384 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	OFD1	O75665	1012 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	FGF18	O76093	207 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ARF4	P18085	180 aa	Predicted RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	KRT17	Q04695	432 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	REST	Q13127	1097 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SF3A1	Q15459	793 aa	Known RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	MAPK6	Q16659	721 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CTC1	Q2NKJ3	1217 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	TMEM119	Q4V9L6	283 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	NOMO2	Q5JPE7	1267 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SPOUT1	Q5T280	376 aa	Known RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	KCNT2	Q6UVM3	1135 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	AGMO	Q6ZNB7	445 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	LRRC55	Q6ZSA7	311 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	C1orf186	Q6ZWK4	172 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	HSCB	Q8IWL3	235 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	MICALL1	Q8N3F8	863 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SYT2	Q8N9I0	419 aa	Predicted RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	POF1B	Q8WVV4	589 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	MRPS27	Q92552	414 aa	Known RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CDCA3	Q99618	268 aa	Predicted RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CCSER1	Q9C0I3	900 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	RSAD1	Q9HA92	442 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SPG21	Q9NZD8	308 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	GIT1	Q9Y2X7	761 aa		13.61	□□□□□ -0.23
CLTCL1-205	ENST00000538828	LRRIQ4	A6NIV6	560 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	RBAK-RBAKDN	I3L0D1	243 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	STX6	O43752	255 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	UBA7	P41226	1012 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ALDH7A1	P49419	539 aa	Known RBP	13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	PTPA	Q15257	358 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SKIV2L	Q15477	1246 aa	Known RBP	13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	LEXM	Q3ZCV2	418 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	RINT1	Q6NUQ1	792 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SLC27A1	Q6PCB7	646 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	DEPTOR	Q8TB45	409 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	URGCP	Q8TCY9	931 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	HELQ	Q8TDG4	1101 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CALML4	Q96GE6	196 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CDK5RAP3	Q96JB5	506 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	TMEM175	Q9BSA9	504 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CCDC113	Q9H0I3	377 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	TMEM134	Q9H6X4	195 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	UBE2Z	Q9H832	354 aa	Predicted RBP	13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ALG13	Q9NP73	1137 aa	Known RBP	13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	NGRN	Q9NPE2	291 aa	Known RBP	13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	GPRC5C	Q9NQ84	441 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	TLR9	Q9NR96	1032 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	MTMR6	Q9Y217	621 aa		13.6	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ATG2A	Q2TAZ0	1938 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828		A0A087WWV3	80 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	PP2D1	A8MPX8	630 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	FSCN2	O14926	492 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	N4BP3	O15049	544 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	BMP1	P13497	986 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ITGA4	P13612	1032 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ABCD1	P33897	745 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SLC12A3	P55017	1021 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	BMS1	Q14692	1282 aa	Known RBP	13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	TCEAL5	Q5H9L2	206 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	CABP7	Q86V35	215 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	THNSL1	Q8IYQ7	743 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SLC39A11	Q8N1S5	342 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	RNF169	Q8NCN4	708 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SMG8	Q8ND04	991 aa	Known RBP	13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SPIRE2	Q8WWL2	714 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	PNMA5	Q96PV4	448 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	PRDM6	Q9NQX0	595 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	TBC1D13	Q9NVG8	400 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	ARHGAP28	Q9P2N2	729 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	IPP	Q9Y573	584 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	SRPRB	Q9Y5M8	271 aa	Known RBP	13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	IRAK3	Q9Y616	596 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828	PLXNA4	Q9HCM2	1894 aa		13.59	□□□□□ -0.23
CLTCL1-205	ENST00000538828		E9PMD0	336 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828		H0YCG3	227 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	DLL1	O00548	723 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	DNAJB1	P25685	340 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	CDC25A	P30304	524 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	MAPK7	Q13164	816 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	DMP1	Q13316	513 aa	Predicted RBP	13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	GIT2	Q14161	759 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	ATL3	Q6DD88	541 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	KCNK18	Q7Z418	384 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	GPR65	Q8IYL9	337 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	DAW1	Q8N136	415 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	EFHB	Q8N7U6	833 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	BSND	Q8WZ55	320 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	ADPGK	Q9BRR6	497 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	TRIM6	Q9C030	488 aa	Predicted RBP	13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	NRDE2	Q9H7Z3	1164 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	ODF2L	Q9ULJ1	636 aa		13.58	□□□□□ -0.24
CLTCL1-205	ENST00000538828	FAM50B	Q9Y247	325 aa		13.58	□□□□□ -0.24

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