RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 USP17L3A6NCW0 530 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 USP17L4A6NCW7 530 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 MXD4Q14582 209 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ARID5BQ14865 1188 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 NAALADL2Q58DX5 795 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 USP17L1Q7RTZ2 530 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 PATL1Q86TB9 770 aaKnown RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ETNK1Q9HBU6 452 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ASAP2O43150 1006 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 NR3C1P04150 777 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 EIF2AK2P19525 551 aaKnown RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CHRNA3P32297 505 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 NT5C2P49902 561 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 POU5F1BQ06416 359 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 KLC1Q07866 573 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ZNF699Q32M78 642 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CEP55Q53EZ4 464 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ZNF394Q53GI3 561 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 NFRKBQ6P4R8 1299 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ZNF564Q8TBZ8 553 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 NUP85Q9BW27 656 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 TBC1D23Q9NUY8 699 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CSPG5O95196 566 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 BRAFP15056 766 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 GJA8P48165 433 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CDK8P49336 464 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CARSP49589 748 aaKnown RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ERFEQ4G0M1 354 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 KLHL23Q8NBE8 558 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 AIFM3Q96NN9 605 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 PARVBQ9HBI1 364 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 SEC31BQ9NQW1 1179 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CFAP74Q9C0B2 1584 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 RPAP1Q9BWH6 1393 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 E5RI56 91 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 BBOX1O75936 387 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 SEMA3FQ13275 785 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 RARS2Q5T160 578 aaKnown RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 LRRC31Q6UY01 552 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 RFWD2Q8NHY2 731 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 BPIFA3Q9BQP9 254 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 DBNDD1Q9H9R9 158 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 IP6K2Q9UHH9 426 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 MCM8Q9UJA3 840 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 TTC7AQ9ULT0 858 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 SPATA31E1Q6ZUB1 1445 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CCDC22O60826 627 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 CYLC2Q14093 348 aaPredicted RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 MAPRE2Q15555 327 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 RC3H1Q5TC82 1133 aaKnown RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 THNSL1Q8IYQ7 743 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 ZNF579Q8NAF0 562 aaKnown RBP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 SNF8Q96H20 258 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.55□□□□□ -0.72
COL4A6-208ENST00000538570 SIKE1Q9BRV8 207 aa10.55□□□□□ -0.72
COL4A6-208ENST00000538570 FAM187AA6NFU0 413 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CLDN3O15551 220 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CATSPER4Q7RTX7 472 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 GRAMD1AQ96CP6 724 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 MLXIPLQ9NP71 852 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PRKAG2Q9UGJ0 569 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 MOSPD1Q9UJG1 213 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ATP11BQ9Y2G3 1177 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 TARBP1Q13395 1621 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PLEKHA8P1O95397 391 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 APOA1P02647 267 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CRYMQ14894 314 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 RBBP7Q16576 425 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 SLC27A3Q5K4L6 730 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 TAGAPQ8N103 731 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 XXYLT1Q8NBI6 393 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PIGOQ8TEQ8 1089 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 DCAF4Q8WV16 495 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 TAF1DQ9H5J8 278 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 DDX56Q9NY93 547 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 AATKQ6ZMQ8 1374 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PLEKHG1Q9ULL1 1385 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ADGBQ8N7X0 1667 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 MYBL1P10243 752 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PRELPP51888 382 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ROR1Q01973 937 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 MAP3K10Q02779 954 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 GPS1Q13098 491 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 ARHGAP22Q7Z5H3 698 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 B4GALNT2Q8NHY0 566 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PDCD6IPQ8WUM4 868 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 RAD54LQ92698 747 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 THAP11Q96EK4 314 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 EPAS1Q99814 870 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 GCC2Q8IWJ2 1684 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 LRRIQ3A6PVS8 624 aaPredicted RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 GPC3P51654 580 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 PDIA2Q13087 525 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 HEATR6Q6AI08 1181 aaKnown RBP10.54□□□□□ -0.72
COL4A6-208ENST00000538570 TMEM270Q6UE05 265 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 SFR1Q86XK3 245 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CATSPER3Q86XQ3 398 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 CATSPER1Q8NEC5 780 aa10.54□□□□□ -0.72
COL4A6-208ENST00000538570 WNT8AQ9H1J5 351 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms