RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 TBCCD1Q9NVR7 557 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF180Q9UJW8 692 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 SUGT1Q9Y2Z0 365 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 A0A0J9YVX5 310 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 PGRMC1O00264 195 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 MAPK13O15264 365 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 PJA2O43164 708 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 PHKA1P46020 1223 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 SLC34A1Q06495 639 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 ANGEL2Q5VTE6 544 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 LRRC74BQ6ZQY2 392 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 EXOC3L1Q86VI1 746 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 PFDN4Q9NQP4 134 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 UBAP1Q9NZ09 502 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 PEAK1Q9H792 1746 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 KRIT1O00522 736 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 DAPK3O43293 454 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 ZBTB43O43298 467 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 PDE5AO76074 875 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 LYNP07948 512 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 ETS2P15036 469 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 CASP1P29466 404 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 GRIN1Q05586 938 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 DCTN2Q13561 401 aaKnown RBP11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 RCN1Q15293 331 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 TMEM53Q6P2H8 277 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 FITM2Q8N6M3 262 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 RBM46Q8TBY0 533 aaKnown RBP11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 PHKBQ93100 1093 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 ZNF184Q99676 751 aaPredicted RBP11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 BLZF1Q9H2G9 400 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 DPH5Q9H2P9 285 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 KCNK9Q9NPC2 374 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 PPP1R9AQ9ULJ8 1098 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 IVNS1ABPQ9Y6Y0 642 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 DOT1LQ8TEK3 1739 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 ABCA3Q99758 1704 aa11.65□□□□□ -0.55
CLSTN3-207ENST00000537408 OAS1P00973 400 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 IRGQQ8WZA9 623 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 CDK5RAP3Q96JB5 506 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 FOXP1Q9H334 677 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 NRDE2Q9H7Z3 1164 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 GPR108Q9NPR9 543 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 CROTQ9UKG9 612 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 ZNF532Q9HCE3 1301 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 STX2P32856 288 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 ITGA9Q13797 1035 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 CRY2Q49AN0 593 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 FIGNQ5HY92 759 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 C16orf87Q6PH81 154 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 ZC3H15Q8WU90 426 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 SYMPKQ92797 1274 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 MYOZ2Q9NPC6 264 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 RASAL2Q9UJF2 1139 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 FAF1Q9UNN5 650 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 BICDL2A1A5D9 508 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 AFPP02771 609 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 MYBP10242 640 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 PMS2P54278 862 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 RTP1P59025 263 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 SREBF2Q12772 1141 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 SAMD7Q7Z3H4 446 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 SH3RF1Q7Z6J0 888 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 ZNF507Q8TCN5 953 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 DHTKD1Q96HY7 919 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 LRRC37BQ96QE4 947 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 METTL14Q9HCE5 456 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 NKIRAS1Q9NYS0 192 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 MTRF1LQ9UGC7 380 aaKnown RBP11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 WDR19Q8NEZ3 1342 aa11.64□□□□□ -0.55
CLSTN3-207ENST00000537408 LTBP3Q9NS15 1303 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 TMEM88BA6NKF7 163 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 BTBD18B2RXH4 712 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CES2O00748 559 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 AP1B1Q10567 949 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 ZBTB17Q13105 803 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 SEPT6Q14141 434 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 SCARF1Q14162 830 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 C6orf163Q5TEZ5 329 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CEP70Q8NHQ1 597 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CASP10Q92851 521 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 GATA6Q92908 595 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 ASCC2Q9H1I8 757 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 PTTG2Q9NZH5 202 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 USP20Q9Y2K6 914 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 ASMTLO95671 621 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CRKP46108 304 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 HDAC4P56524 1084 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 IQCF2Q8IXL9 164 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 SDR16C5Q8N3Y7 309 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CSGALNACT2Q8N6G5 542 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 TTC8Q8TAM2 541 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 ATP6V0A1Q93050 837 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CUEDC2Q9H467 287 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.63□□□□□ -0.552e-6■■■□□ 18.7
CLSTN3-207ENST00000537408 TIMMDC1Q9NPL8 285 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 ARHGEF38Q9NXL2 777 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 TSC22D4Q9Y3Q8 395 aa11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 RPN1P04843 607 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-207ENST00000537408 CNGA2Q16280 664 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms