RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 EEPD1Q7L9B9 569 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 TTC39CQ8N584 583 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 STAMBPL1Q96FJ0 436 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 RUBCNLQ9H714 662 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.31□□□□□ -0.68e-7■■■■□ 22.7
CLIP1-209ENST00000537178 LMO7Q8WWI1 1683 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 MYO1CO00159 1063 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 ASAP2O43150 1006 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 CCDC22O60826 627 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 DIAPH2O60879 1101 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 SERPINB4P48594 390 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 MED21Q13503 144 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 MAPK6Q16659 721 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 DGKHQ86XP1 1220 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 UNC5CLQ8IV45 518 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 RAPGEF5Q92565 580 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 KCNB2Q92953 911 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 KCNF1Q9H3M0 494 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 HEY1Q9Y5J3 304 aa11.31□□□□□ -0.6
CLIP1-209ENST00000537178 COPG1Q9Y678 874 aaKnown RBP11.31□□□□□ -0.6
CLIP1-209ENST00000537178 GMNCA6NCL1 334 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 E5RI56 91 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 ZSCAN9O15535 394 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 ZNF189O75820 626 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 KRT7P08729 469 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 BRAFP15056 766 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 TSPY1Q01534 308 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 LRRC8BQ6P9F7 803 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 BRD2P25440 801 aaKnown RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 CTTNQ14247 550 aaKnown RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 ICA1LQ8NDH6 482 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 PDCD6IPQ8WUM4 868 aaKnown RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 HEMGNQ9BXL5 484 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 SH3GLB2Q9NR46 395 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 LGALS16A8MUM7 142 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 H0Y626 953 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 TRIM16O95361 564 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 UBE2SQ16763 222 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 FASTKD5Q7L8L6 764 aaKnown RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 ZNF589Q86UQ0 364 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 GRAMD1AQ96CP6 724 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 FAM161BQ96MY7 647 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 EGFL8Q99944 293 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 FTOQ9C0B1 505 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 FAM49AQ9H0Q0 323 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 ZSWIM5Q9P217 1185 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 GNAT1P11488 350 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 RESTQ13127 1097 aa11.3□□□□□ -0.6
CLIP1-209ENST00000537178 RARS2Q5T160 578 aaKnown RBP11.3□□□□□ -0.6
CLIP1-209ENST00000537178 CAMTA1Q9Y6Y1 1673 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 CFAP73A6NFT4 308 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 IL10P22301 178 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 CHRNA3P32297 505 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 SERPINB10P48595 397 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 PMS2P54278 862 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 MAGOHP61326 146 aaKnown RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 PPP2R2AP63151 447 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 PRAMEP78395 509 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 RAD51Q06609 339 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ZNF699Q32M78 642 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ICE2Q659A1 982 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 HEATR6Q6AI08 1181 aaKnown RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 LCORLQ8N3X6 602 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ATP11CQ8NB49 1132 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 CATSPER1Q8NEC5 780 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 FARP1Q9Y4F1 1045 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 UBE4BO95155 1302 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 A0A087WWV3 80 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ATP1A3P13637 1013 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 TBXAS1P24557 533 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 CRKLP46109 303 aaKnown RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 IREB2P48200 963 aaKnown RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 CCDC85BQ15834 202 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ZNF394Q53GI3 561 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 TJAP1Q5JTD0 557 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 BEND6Q5SZJ8 279 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ATP6V0A4Q9HBG4 840 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ETNK1Q9HBU6 452 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 CASS4Q9NQ75 786 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 DCTN4Q9UJW0 460 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 PNMA3Q9UL41 463 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 FAM187AA6NFU0 413 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 DAB1O75553 588 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 PHKA2P46019 1235 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 GIMAP8Q8ND71 665 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ASIC4Q96FT7 647 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 YIPF3Q9GZM5 350 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 KDM4CQ9H3R0 1056 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 DDX28Q9NUL7 540 aaKnown RBP11.29□□□□□ -0.6
CLIP1-209ENST00000537178 FBXO40Q9UH90 709 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 SYNDIG1LA6NDD5 238 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 TRPC1P48995 793 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 BCAR1P56945 870 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 GRIN1Q05586 938 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 SARM1Q6SZW1 724 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 SCN4BQ8IWT1 228 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 ANKRD7Q92527 254 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 C11orf70Q9BRQ4 267 aa11.29□□□□□ -0.6
CLIP1-209ENST00000537178 PVALEFA0A1B0GWK0 134 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PRKAB2O43741 272 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms