RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 ALDH2P05091 517 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 XRCC6P12956 609 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 FGFR4P22455 802 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 SLC11A1P49279 550 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 MXD4Q14582 209 aaPredicted RBP12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 MTERF2Q49AM1 385 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 OTOP3Q7RTS5 596 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 CATSPER4Q7RTX7 472 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 NEK8Q86SG6 692 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 RHPN2Q8IUC4 686 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 TCP11Q8WWU5 503 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 PRPF31Q8WWY3 499 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 PSPC1Q8WXF1 523 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 NXPE3Q969Y0 559 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 PHOX2BQ99453 314 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 CHST7Q9NS84 486 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 IGSF9Q9P2J2 1179 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 DPP7Q9UHL4 492 aa12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 PIN4Q9Y237 131 aaKnown RBP12.55□□□□□ -0.4
CLSTN3-206ENST00000535668 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 MEIS3P2A8K0S8 358 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 DDX11L8A8MPP1 907 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CPLX1O14810 134 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CHMP2AO43633 222 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 ZC3H11AO75152 810 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CSDE1O75534 798 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CDKL5O76039 1030 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 DDHD2O94830 711 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CSPG5O95196 566 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 SOD2P04179 222 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 EPCAMP16422 314 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 PTENP60484 403 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CCT2P78371 535 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 FOXK2Q01167 660 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 LAMTOR4Q0VGL1 99 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 KIAA0319Q5VV43 1072 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 ASTLQ6HA08 431 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 LLGL2Q6P1M3 1020 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 OTUD6AQ7L8S5 288 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 FERMT3Q86UX7 667 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 SKAP1Q86WV1 359 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 ZNF280BQ86YH2 543 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 SLFN12Q8IYM2 578 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 TDRD5Q8NAT2 981 aaKnown RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 GJA10Q969M2 543 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 SCLT1Q96NL6 688 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 KLHL5Q96PQ7 755 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 EMILIN2Q9BXX0 1053 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 ZSWIM4Q9H7M6 989 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 MINDY3Q9H8M7 445 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 RSAD1Q9HA92 442 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 WRAP73Q9P2S5 460 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 DNAJB4Q9UDY4 337 aa12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 NAP1L2Q9ULW6 460 aaPredicted RBP12.54□□□□□ -0.4
CLSTN3-206ENST00000535668 CEP250Q9BV73 2442 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 PLXNA3P51805 1871 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 TMEM150BA6NC51 233 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 NT5C1B-RDH14C9J2C7 533 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 PFKFB2O60825 505 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 CNPP09543 421 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 YWHABP31946 246 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 ANAPC15P60006 121 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 INF2Q27J81 1249 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 TRMT1LQ7Z2T5 733 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 CABP7Q86V35 215 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 KSR1Q8IVT5 923 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 COLGALT2Q8IYK4 626 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 RNF169Q8NCN4 708 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 SMG8Q8ND04 991 aaKnown RBP12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 URGCPQ8TCY9 931 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 TNFRSF25Q93038 417 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 LPPQ93052 612 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 ACSF2Q96CM8 615 aaPredicted RBP12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 RPS6KC1Q96S38 1066 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 ANKEF1Q9NU02 776 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 EPS15L1Q9UBC2 864 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 DOCK8Q8NF50 2099 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 DCHS1Q96JQ0 3298 aa12.53□□□□□ -0.4
CLSTN3-206ENST00000535668 NRP1O14786 923 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 SLITRK3O94933 977 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 XBP1P17861 261 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 NPEPPSP55786 919 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 DSG1Q02413 1049 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 TDGQ13569 410 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 AMHR2Q16671 573 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 LETM2Q2VYF4 491 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 LILRA6Q6PI73 481 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 TMEM105Q8N8V8 129 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 ZNF579Q8NAF0 562 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 GSTCDQ8NEC7 633 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 ZNF668Q96K58 619 aaPredicted RBP12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 CEP170P1Q96L14 293 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 LXNQ9BS40 222 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 HERC2P3Q9BVR0 1158 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 PLEKHA4Q9H4M7 779 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 WDR6Q9NNW5 1121 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 XPNPEP1Q9NQW7 623 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 MRPL17Q9NRX2 175 aaKnown RBP12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 MARCH5Q9NX47 278 aa12.52□□□□□ -0.41
CLSTN3-206ENST00000535668 FNIP2Q9P278 1114 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms