RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TRMT1Q9NXH9 659 aaKnown RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 VPS54Q9P1Q0 977 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 FBXO2Q9UK22 296 aaPredicted RBP9.16□□□□□ -0.94
NEDD8-207ENST00000533242 KCNH3Q9ULD8 1083 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 ST3GAL5Q9UNP4 418 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 PCDHA5Q9Y5H7 936 aa9.16□□□□□ -0.94
NEDD8-207ENST00000533242 IGKV6D-21A0A0A0MT36 114 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 HOXA2O43364 376 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 SMC2O95347 1197 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 TNNT1P13805 278 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 PPM1AP35813 382 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 DSC3Q14574 896 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 HSP90AA4PQ58FG1 418 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 ZNF484Q5JVG2 852 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 FAM160B1Q5W0V3 765 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 LLGL2Q6P1M3 1020 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 ASCL5Q7RTU5 278 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 TEX2Q8IWB9 1127 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 KIAA0319LQ8IZA0 1049 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 TCF25Q9BQ70 676 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 APOL5Q9BWW9 433 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 NAT10Q9H0A0 1025 aaKnown RBP9.15□□□□□ -0.94
NEDD8-207ENST00000533242 CDHR5Q9HBB8 845 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 KCNH7Q9NS40 1196 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 HCSTQ9UBK5 93 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 MYO10Q9HD67 2058 aa9.15□□□□□ -0.94
NEDD8-207ENST00000533242 A0A087X0B3 334 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 CUTAO60888 179 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 MTHFRP42898 656 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 CRYBB1P53674 252 aaPredicted RBP9.15□□□□□ -0.95
NEDD8-207ENST00000533242 ITIH3Q06033 890 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 GOLGA8FQ08AF8 430 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 GOLGA8DPQ0D2H9 430 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 NPY5RQ15761 445 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 CES5AQ6NT32 575 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 KRBA2Q6ZNG9 492 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 TMC6Q7Z403 805 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 TMTC2Q8N394 836 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 TMEM105Q8N8V8 129 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 TMEM40Q8WWA1 233 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 TIGD1Q96MW7 591 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 ZNF558Q96NG5 402 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 MED15Q96RN5 788 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 ADAM7Q9H2U9 754 aa9.15□□□□□ -0.95
NEDD8-207ENST00000533242 AGO4Q9HCK5 861 aaKnown RBP9.15□□□□□ -0.95
NEDD8-207ENST00000533242 HIDE1A8MVS5 230 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 DEXIO95424 95 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CALM1P0DP23 149 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CALM2P0DP24 149 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CALM3P0DP25 149 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 FGFR1P11362 822 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 FANCCQ00597 558 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 KRT17Q04695 432 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 SMC1AQ14683 1233 aaKnown RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 TPD52L1Q16890 204 aaPredicted RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 ASTLQ6HA08 431 aaPredicted RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 KCNT2Q6UVM3 1135 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 ERMP1Q7Z2K6 904 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 ZDHHC14Q8IZN3 488 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 LRRC43Q8N309 656 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 PDILTQ8N807 584 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 KRI1Q8N9T8 703 aaKnown RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CASD1Q96PB1 797 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 POMKQ9H5K3 350 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 RNF19AQ9NV58 838 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 INTS13Q9NVM9 706 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 SPG21Q9NZD8 308 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 GINS2Q9Y248 185 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 ZDBF2Q9HCK1 2354 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 C2CD4DB7Z1M9 353 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 POLR2DO15514 142 aaKnown RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CTIFO43310 598 aaKnown RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 ARP10275 920 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 SP100P23497 879 aaPredicted RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 ITGB3BPQ13352 177 aaPredicted RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 E4F1Q66K89 784 aaPredicted RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 MCTP2Q6DN12 878 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 LRRC55Q6ZSA7 311 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 NYAP1Q6ZVC0 841 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 FAM228AQ86W67 206 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 TRIM22Q8IYM9 498 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CNNM3Q8NE01 707 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 FOXP1Q9H334 677 aaPredicted RBP9.14□□□□□ -0.95
NEDD8-207ENST00000533242 SERTAD1Q9UHV2 236 aa9.14□□□□□ -0.95
NEDD8-207ENST00000533242 CLASP2O75122 1294 aaKnown RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 FOSP01100 380 aaPredicted RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 CASP1P29466 404 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 CLCN5P51795 746 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 ZRSR1Q15695 479 aaKnown RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 ABHD15Q6UXT9 468 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 NIPA1Q7RTP0 329 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 TMC7Q7Z402 723 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 CYP2W1Q8TAV3 490 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 ZNF592Q92610 1267 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 CSRNP2Q9H175 543 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 DZANK1Q9NVP4 752 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 FANCLQ9NW38 375 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 V9GY48 417 aaPredicted RBP9.13□□□□□ -0.95
NEDD8-207ENST00000533242 C2orf71A6NGG8 1288 aa9.13□□□□□ -0.95
NEDD8-207ENST00000533242 ZBTB42B2RXF5 422 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms